Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2154 288 2e-75 seq1731 127 3e-27 seq1571 107 3e-21 seq1732 95.1 2e-17 seq1298 87.8 3e-15 seq453 87.8 3e-15 seq151 86.0 1e-14 seq863 78.8 2e-12 seq401 73.4 6e-11 >seq2154 Length=2724 Score = 288 bits (318), Expect = 2e-75 Identities = 236/281 (84%), Gaps = 7/281 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| Sbjct 1514 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTGGCGGCTGTCTGACCAGGCAGT 1457 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1456 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1397 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG---CTTCGGCCCCG 177 ||| | || || | |||| ||||||||||||||||||||||||| || ||||| | Sbjct 1396 GAAAGCGGCGAGTACCTCCCACACATCGTAGTCGGATACGAATAGGCCCCTAGGGCCCTG 1337 Query 178 AACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237 || ||||||||| ||||| || || | ||| | ||| ||| ||||| || || Sbjct 1336 AATCTTAGCAGGTCGGCATTGGTGCTCGGGGAGAAATCCTGGGTGCT-AGCTGACGTCTT 1278 Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| | |||||| |||||||| |||||||| ||||| Sbjct 1277 GCAATTT-AACATGCGTGGGGATAAAACCTTTGCATACGAC 1238 >seq1731 Length=8278 Score = 127 bits (140), Expect = 3e-27 Identities = 109/132 (83%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| ||||||||| || || || |||| | |||| Sbjct 7117 GTACGAGAGGAACCGTTGG-TTCAGAC-AATTGGTTTATGGGGTTGGCTGAATAACCAGT 7174 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||| |||||||||||||||| |||| ||| ||||||||||||||||||||||| |||| Sbjct 7175 GCCCCGAAGCTACCATCTGCAGGATAATGACTGAACGCCTCTAAGTCAGAATCTATGCTG 7234 Query 121 GAACGGGGTGAT 132 ||| | |||||| Sbjct 7235 GAATGCGGTGAT 7246 >seq1571 Length=97646 Score = 107 bits (118), Expect = 3e-21 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||| |||| | |||||| ||||| || || | | |||| || ||| Sbjct 1298 GTACGAGAGGGACCGTTGG-TTCAGA-TAATTCGTAACTGTGATTAGCTGAAAAGCTAGT 1241 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1240 GCCGCCAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 1183 >seq1732 Length=9078 Score = 95.1 bits (104), Expect = 2e-17 Identities = 132/179 (74%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| | |||||||| | | | || ||| | || | Sbjct 3656 GTACGAGAGGAACCGTTGG-TTCACA-TAATTGGTCAATTCAGTTGATTGAAACGTCAAT 3599 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 || | ||||||||||| || |||||| ||||||||||||||||| |||||||||||| Sbjct 3598 GCTGAGAAGCTACCATGTGTAGGATTACGGCTGAACGCCTCTAAGCCAGAATCCATGCTG 3539 Query 121 GAACGGGGTGATTCTC-TCCTGCACA-TCGTAGTC--GGATACGAATAGGCTTCGGCCC 175 ||| | || ||| | | ||| | || || || | ||| ||||||||||||||| Sbjct 3538 GAAAGTGGCGATACGCAGCCTTCCCAGATGTTATCATGAGTACAAATAGGCTTCGGCCC 3480 >seq1298 Length=92593 Score = 87.8 bits (96), Expect = 3e-15 Identities = 85/105 (81%), Gaps = 7/105 (7%) Strand=Plus/Minus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACC--ATCT 78 ||||| ||||||||| |||||| | |||| || |||||||| |||||||| |||| Sbjct 26997 TTCAGGATAATTGGTACTTGCGGTTAGCTGAAAAGCTAGTGCCGCCAAGCTACCCCATCT 26938 Query 79 GCT---GGATTA-TGGCTGAACGCCTCTAAGTCAGAAT-CCATGC 118 | | | |||| ||||||||||||||||||||||||| |||||| Sbjct 26937 GGTAAGGAATTAATGGCTGAACGCCTCTAAGTCAGAATCCCATGC 26893 >seq453 Length=12031 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| |||||||| ||||| | || ||| |||| Sbjct 7752 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTGTTTGCTGTTGAATGAAACTTCAGT 7695 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||||||| || | | ||||||| ||||||||| | ||| ||||| | Sbjct 7694 GTGGCTAAGCTACCATCTGTTGACTAAAGGCTGAAAGCCTCTAAGCCCGAAGTCATGCTA 7635 Query 121 GA 122 || Sbjct 7634 GA 7633 >seq151 Length=6618 Score = 86.0 bits (94), Expect = 1e-14 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTG-CGGCTGTCTGACCAGGCAG 59 ||||||||||||| | |||| | |||||||| |||| | | |||| ||| ||||| Sbjct 3303 GTACGAGAGGAACTGTTTGATTC-GTGTAATTGGTCTTTGGCCGTTGTCCAACCGGGCAG 3361 Query 60 TGCCGCGAA-GCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||| ||||| ||||||| ||| ||| ||||||||||||| ||||| ||||||| Sbjct 3362 TGCGGCGAAAGCTACCACACGCTAGATAATGGCTGAACGCC-CTAAGCCAGAATC 3415 >seq863 Length=9128 Score = 78.8 bits (86), Expect = 2e-12 Identities = 93/118 (79%), Gaps = 6/118 (5%) Strand=Plus/Plus Query 1 GTACGAG-AGGAACCGCGGAATTCAGAATAATTGGTTTTT-GCGGCTGTCTGACCAGGCA 58 ||||||| |||||||| || ||| | | ||||||| | ||| || ||| || || Sbjct 8557 GTACGAGCAGGAACCGTTGA-TTC-GCACAATTGGTCATCCGCGCTTGGTTGAAAAGCCA 8614 Query 59 GTGCCGCGAAGCTACCATCTGCTGG-ATTATGGCTGAACGCCTCT-AAGTCAGAATCC 114 ||| |||||||||||| | ||||| |||||| |||||||||||| |||||||||||| Sbjct 8615 GTGGCGCGAAGCTACCGTGCGCTGGGATTATGACTGAACGCCTCTAAAGTCAGAATCC 8672 >seq401 Length=568103 Score = 73.4 bits (80), Expect = 6e-11 Identities = 70/90 (78%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 29 AATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTAT 88 |||||||| ||||| | |||| || |||||| | ||||| ||||||| |||| || Sbjct 232500 AATTGGTTACTGCGGTTAGCTGAAAAGCTAGTGCCACCAAGCTGCCATCTGTAGGATGAT 232441 Query 89 GGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||| | ||||||| |||| Sbjct 232440 GGCTGAACGCCTCAACATCAGAATTTATGC 232411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819182818560