Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq1501 149 2e-31 >seq1501 Length=377221 Score = 149 bits (164), Expect = 2e-31 Identities = 240/345 (70%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 38098 CTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGA 38157 ||| |||||||| || || |||| |||||| ||| | | | |||||| || || Sbjct 113714 CTTCCAGTTCTACGTGGCGGACGGGAAGTTGTCGTGCCAGCTGTACCAGCGCAGCGCGGA 113773 Query 38158 TACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGC 38217 | || | || ||||||| ||||||||||||||||||||| ||||||| ||| | || Sbjct 113774 CATCTTCCTGGGCGTGCCGTTCAACATCGCGAGCTACGCGCTGCTGACGCAGATGCTGGC 113833 Query 38218 CCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTA 38277 || ||||||| ||| |||| || |||| | || ||||| ||| ||| | || Sbjct 113834 GCAGCAATGCGGACTGGGGCTCGGGGACTTCATCTGGACGGGCGGGGACTGCCACATCTA 113893 Query 38278 CAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAA 38337 | |||||| | || || | | | ||||||| ||||||||||| || |||| Sbjct 113894 CGCAAATCACTTCGAGCAGGTGCAGACGCAGCTGGCGCGCGAGCCGTATGCGTACCCGAC 113953 Query 38338 GCTTGTGCTGAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGACGACTTTGAAAT 38397 | | ||| | || || ||||| |||| ||||| ||||| || | ||| ||||| || | Sbjct 113954 GATGGTGATCAAGCGCCAGCCGGCGTCGATCTTCGACTACGAGTTCGAGGACTTCGAGCT 114013 Query 38398 CGTCGGCTACGATCCGCATCCGGCGATTAAAGCACCGGTGGCGGT 38442 | |||| | | || ||||||| || || ||||||||||| Sbjct 114014 GCAGGACTACCAGCACCACGCGGCGATCAAGGCGCCGGTGGCGGT 114058 Score = 123 bits (136), Expect = 7e-24 Identities = 279/415 (67%), Gaps = 12/415 (3%) Strand=Plus/Plus Query 37683 TCTTAGAAAACGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCG 37742 |||| || ||||||| | || | |||||| ||||| ||||||| | || |||| Sbjct 69625 TCTTCGAGCACGGCGTGGCCAAGGGAGACCGCACGGGAACGGGCACGCGGAGCGTCTTCG 69684 Query 37743 GCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGC 37802 | | ||| | || ||| | | | || ||||| ||||||||||| ||||| || ||| Sbjct 69685 GTCATCAGATGCGATTCGATCTGAACGAGGGATTCCCGCTCGTGACGACGAAGAAGGTGC 69744 Query 37803 ATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCT 37862 || | || ||||| || ||||| ||||| | || || |||||||| | Sbjct 69745 ATCTGAAGTCGATCATCCTGGAGCTGCTGTGGTTCCTGCGCGGGGACTCGAACGTCAAGT 69804 Query 37863 ATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCG 37922 |||||||| ||| ||||| ||||| ||||||||| ||| |||| || || | Sbjct 69805 GGTTGCAGGAACGCGGCTGCACGATCTGGGACGAGTGGGCGCGCGAGGACGGTGACCTGG 69864 Query 37923 GCCCGATTTACGGCGCGCAATGGC---GCTCGTGGAAGGGAGCAGACGGGAAAACCA--T 37977 | ||| | ||||||| |||||||| ||| | |||| | | ||| ||| | Sbjct 69865 GGCCGGTGTACGGCGTGCAATGGCGGAGCTGGCCCAAGGCGGGCGGCGG-----CCATGT 69919 Query 37978 CGACCAGATCGCATGGGTTGTCGAAG-AGATCAAACGAAATCCGCATTCACGCCGGCTGC 38036 ||||||||||| ||| || |||| || | || || ||| |||| |||||| | Sbjct 69920 GGACCAGATCGCCGAGGTGGT-GAAGCAGCTGAAGGCCAACCCGGATTCGCGCCGGATCA 69978 Query 38037 TGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCA 38091 | ||| || ||||| || || || ||||| ||||| |||| |||||| || Sbjct 69979 TCGTGTCGGCGTGGAACGTGGCGGAGCTGGACCAGATGGCGCTGATGCCGTGCCA 70033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130636641327250