Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq1501 179 6e-40 seq1415 87.8 3e-12 >seq1501 Length=377221 Score = 179 bits (198), Expect = 6e-40 Identities = 233/317 (74%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 196777 GTTGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACAT 196836 |||||| || |||||||| ||||| || ||||| || ||||| || || ||||||||||| Sbjct 113741 GTTGTCGTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTGCCGTTCAACAT 113800 Query 196837 CGCGTCTTACGCATTGCTGATTCACATGGTGGCGCAAC-AGGTTAACATGGTACCGGGCG 196895 |||| ||||| |||||| || ||| ||||||| | | | || ||| | || | Sbjct 113801 CGCGAGCTACGCGCTGCTGACGCAGATGCTGGCGCAGCAATGCGGAC-TGGGGCTCGGGG 113859 Query 196896 AGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAG 196955 | ||| | ||||| ||||| ||| |||||||||| | |||||| | || ||||| | || Sbjct 113860 ACTTCATCTGGACGGGCGGGGACTGCCACATCTACGCAAATCACTTCGAGCAGGT-GCAG 113918 Query 196956 A-ACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGAC 197014 | |||||| | || | ||| | |||| |||||| |||| ||||| ||| | |||| Sbjct 113919 ACGCAGCTGGCGCGCGAGCCGTATGCGTACCCGACGATGGTGATCAAGCGCCAGCCGGCG 113978 Query 197015 AGTATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCG 197074 |||||||| ||| | ||||| |||||||| ||| | |||| | | || ||||| Sbjct 113979 TCGATCTTCGACTACGAGTTCGAGGACTTCGAGCTGCAGGACTACCAGCACCACGCGGCG 114038 Query 197075 ATTAAAGCCCCGGTGGC 197091 || || || |||||||| Sbjct 114039 ATCAAGGCGCCGGTGGC 114055 Score = 140 bits (154), Expect = 5e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 196163 CAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTG 196222 |||||||| ||||||||| | || ||||||||||| || || |||||||| | |||||| Sbjct 69690 CAGATGCGATTCGATCTGAACGAGGGATTCCCGCTCGTGACGACGAAGAAGGTGCATCTG 69749 Query 196223 CGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTG 196282 || ||||| | || |||||||||||||| ||||||| | ||| |||||| || Sbjct 69750 AAGTCGATCATCCTGGAGCTGCTGTGGTTCCTGCGCGGGGACTCGAACGTCAAGTGGTTG 69809 Query 196283 AATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCG 196342 | || ||| | | |||||| ||||||||||| ||| |||| ||||||||||| Sbjct 69810 CAGGAACGCGGCTGCACGATCTGGGACGAGTGGGCGCGCGAGGACGGTGACCTGGGGCCG 69869 Query 196343 GTTTACGGTAAGCAGTGGCG 196362 || ||||| ||| ||||| Sbjct 69870 GTGTACGGCGTGCAATGGCG 69889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/160 (74%), Gaps = 16/160 (10%) Strand=Plus/Plus Query 196787 CAGCTGTATCAGCG-TAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCTTA 196845 ||||||||||| || | |||| || | ||||| |||||||||||||| ||||| ||| Sbjct 70715 CAGCTGTATCAACGGTCTTGCG-ATGTTTTCCTTGGTGTACCGTTCAATATCGCCAGTTA 70773 Query 196846 CGCATTGCTGATTCACATGGTG---GCGCAACAG----GTTAACATGGTACCGGGCGAGT 196898 ||| | || ||| ||| || || || ||| ||| ||| ||| ||||| | Sbjct 70774 TGCACTACT---TCAGATGATGCTCGCCCAGCAGTGCGGTT----TGGAACCCGGCGATT 70826 Query 196899 TCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCA 196938 |||||||||| ||||| ||||| ||||||||| |||||| Sbjct 70827 TCGTTTGGACCGGCGGCGACGTGCACATCTACAGCAATCA 70866 >seq1415 Length=39952 Score = 87.8 bits (96), Expect = 3e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 3783 AACCA-TTTAGGA-CTGTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCG 3840 ||||| ||||||| | ||||||||| |||||||||||| ||||||||||| | ||||| Sbjct 8117 AACCAGTTTAGGAGCGGTAGTTCAGTTGGTTAGAATACCGGCCTGTCACGCCGGGGGTCG 8176 Query 3841 CGGGTTCGATTCCCGTC 3857 ||||||||| ||||||| Sbjct 8177 CGGGTTCGAGTCCCGTC 8193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771521520133800