Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq100 468 6e-127 >seq100 Length=112360 Score = 468 bits (518), Expect = 6e-127 Identities = 669/942 (71%), Gaps = 0/942 (0%) Strand=Plus/Plus Query 159845 GGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTC 159904 || |||||||| || ||||||| || || || || |||| |||| || ||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 159905 GCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCA 159964 | || ||||| ||||| || || ||||| ||||| || || || || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 159965 CTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGT 160024 || | || || |||||||| || | || || || |||| ||| |||||||||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 160025 CTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGT 160084 |||| || ||||| || |||||||| || || | || || ||| | |||||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 160085 CCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAG 160144 || | ||||| |||| || |||||| | | || | | ||| | ||||||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 160145 TGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCA 160204 |||||| | | || | || ||||| || ||||| | |||||| | || |||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 160205 GTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGAT 160264 || ||||| || | ||||||||| | | || || | || || || ||| || ||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 160265 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACAC 160324 | ||||||| | || || || || |||||||||| ||| | || |||||||| || || Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 160325 AATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTG 160384 || || | |||||||| || |||||| ||||| ||||| || || || || || | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 160385 TTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACT 160444 || ||||| ||||| |||||| | || ||||| | | | || || | |||| Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 160445 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCA 160504 || || | || ||||| ||||| || || ||||| ||||| || || || || || || Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 160505 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCT 160564 || || || || ||||| | || || || ||||| ||| ||||| |||||||| || Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 160565 CTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTT 160624 | ||||||||| | ||||| ||||| || |||||||| ||||| ||||| | || || Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 160625 TCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAA 160684 ||| ||||| || || | || || || ||||| || || || || | || | |||| Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 160685 GGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTC 160744 ||| ||| | |||||||||||||| | | ||| | || ||| || || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 160745 ATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCT 160786 ||||| || ||||| ||||| |||||||| | || |||||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 452 bits (500), Expect = 4e-122 Identities = 712/1009 (71%), Gaps = 8/1009 (1%) Strand=Plus/Plus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTT-TT 161585 || |||||||| ||| ||| | || || ||||| || |||||||| || || || || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGT-TTATTATTATT 28644 Query 161586 TCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTG 161645 ||| || ||| | ||| | || || ||| ||||||| | || || | ||| || Sbjct 28645 TCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTG 28704 Query 161646 GTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGT 161705 |||||||||||| | ||||| |||| | | || ||| |||||| | || || || || Sbjct 28705 GTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 161706 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCA 161765 | || |||||| | |||||| |||||| | |||||| | ||||| || || || || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 161766 AGGGGATTTCGTCAG-GTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 161824 ||| |||| || | ||| | || |||| || || |||| ||||| || | |||| Sbjct 28825 AGGAAATTT-TTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 161825 GGGCTTTCGCTCTGATTGGATTCATGCTT-CGTCAGTTTGAACTTGCTCGTCTTATCGGT 161883 | ||||| || || |||||||| ||||| || || |||||| ||||||| | | || Sbjct 28884 GAGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 161884 ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTT 161943 || || |||||||||||| | || || || | || || || ||||||| ||| ||| Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 161944 CTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCT 162003 | | |||||| | || || | |||||| || || ||| ||||| ||||| || Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 162004 ATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCAC 162063 ||||| | || ||||| ||| ||||||| ||||| |||||||| | ||||| ||||| Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 162064 ATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACT 162123 |||||||| || || || | || || | ||| || || | ||| ||||| |||| ||| Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 162124 GTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCT 162183 |||||||| || || || ||||||| || ||||||||| || | || ||| | || Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCT 29242 Query 162184 ACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTC 162243 || ||| ||| || || || || |||||||| || ||| | || |||||||| || || Sbjct 29243 ACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTT 29302 Query 162244 GGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATG 162303 || | |||||| ||||| | ||||| || || |||||||| || ||||| || | Sbjct 29303 GGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACC 29362 Query 162304 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTT-CGTGCTTACGA 162362 ||| | ||| |||| | || || ||| | ||||| || |||| ||| || || || || Sbjct 29363 GGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGC-ATTAAACTTACGCGCCTATGA 29421 Query 162363 CTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAA 162422 |||| | || || || | || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 29422 CTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAA 29481 Query 162423 GAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGA 162482 ||||| | || |||||||| | | |||| |||| || || || || ||||| Sbjct 29482 AAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGA 29541 Query 162483 GAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGA 162531 || | | |||| || || || || | || | || ||||| || ||| Sbjct 29542 AAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGA 29590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551361078387000