Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq100 522 3e-143 seq280 95.1 2e-14 seq653 86.0 8e-12 >seq100 Length=112360 Score = 522 bits (578), Expect = 3e-143 Identities = 684/944 (72%), Gaps = 6/944 (1%) Strand=Plus/Plus Query 188893 GGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACCATCTGCTTCATCGTC 188952 || |||||||| || ||||||| ||||||||| | | || || | || ||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 188953 GCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCA 189012 | ||| |||| || || || |||||||||||||| || ||||| || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 189013 CTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGT 189072 || | |||||||||||||| || | || | || | ||| || |||||||||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 189073 CTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGT 189132 |||| || || || || |||||||| || || | ||||| ||| | || ||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 189133 CCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGT 189189 || | |||||| |||| || |||||| | | || | || || | | | |||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGG--TGTA-GCTTGTTATTTAGGTCGT 40490 Query 189190 GAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCA 189249 ||||||||| | | || | || ||||| |||||||| | |||| | || || Sbjct 40491 GAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCT 40550 Query 189250 CCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCT 189309 || || || |||||| | || || || | | ||||| | || ||||| ||| ||| Sbjct 40551 CCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCT 40610 Query 189310 GACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAG 189369 || | ||||| || || || || || || |||| |||| | || |||||||| ||| Sbjct 40611 GATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAG 40670 Query 189370 CACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCA 189429 || ||||| | ||||| || || |||||| || || || || || || || |||||| Sbjct 40671 CATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCA 40730 Query 189430 CTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAA 189489 | || || |||||||| || || | || || || ||| | |||||||||| ||||| Sbjct 40731 TTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAA 40790 Query 189490 ACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTT 189549 | ||| || | || ||||| ||||| |||||||||||||||||||| || || || ||| Sbjct 40791 AGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTT 40850 Query 189550 GCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGT 189609 |||||||| ||||||||||| | | || || ||||| ||| || || ||||| ||| Sbjct 40851 GCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGT 40910 Query 189610 TCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGC 189669 ||| | ||||||||| | ||||| |||||||| || || || ||||| || || | || Sbjct 40911 TCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGA 40970 Query 189670 GTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGT 189729 | || || ||||| || ||| | || || || ||||| |||||||| ||| ||||| | Sbjct 40971 ATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGC 41030 Query 189730 CAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAA 189789 ||||| | || | ||||| |||||||| || | ||| | || |||||| || ||| Sbjct 41031 CAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAA 41090 Query 189790 GTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGC 189833 || |||||||| ||||| ||||| |||||||| | ||||| || Sbjct 41091 GTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGC 41134 Score = 511 bits (566), Expect = 6e-140 Identities = 724/1011 (72%), Gaps = 10/1011 (1%) Strand=Plus/Plus Query 189999 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 190058 ||||||||||| ||| ||| | ||||| ||||| || |||||||| ||| | | ||| Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 190059 CCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGG 190118 || || ||| | || | || || ||| ||||||| | || |||| ||| ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 190119 TACACCCACGGACTCGCAAGTAGTTACCTT---GAGGGTGCTAATTTTCTTACAGCGGCT 190175 || ||||| || | || ||| | | || || ||| ||||||| | || || ||| Sbjct 28706 TATACCCATGGCTTAGC---TAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCT 28762 Query 190176 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCT 190235 || ||||| || ||| || |||||| |||||| | ||||| | ||||| || ||| | Sbjct 28763 GTTTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCG 28822 Query 190236 CAAGGCGATTTCGTCAG-GTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 190294 ||||| |||| || | ||| | || |||| || || ||| | ||||| || | || Sbjct 28823 CAAGGAAATTT-TTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACA 28881 Query 190295 CGGGGCTTTCGCTCTAATTGGATTCATGCTT-CGTCAGTTTGAACTGGCACGTCTCATCG 190353 ||| ||||| || ||||||||||| ||||| || || |||||| | || || | | | Sbjct 28882 CGGAGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAG 28940 Query 190354 GTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 190413 | || || |||||||||||| | || || || | || ||||| |||||||| ||| | Sbjct 28941 GAATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTT 29000 Query 190414 TTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAG 190473 || | | || ||| | || ||| | || ||||| || || ||| || ||||| |||| Sbjct 29001 TTTTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAG 29060 Query 190474 CGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCC 190533 | || || || || | || ||||| || || |||||||| ||||| | || || |||| Sbjct 29061 CAATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCC 29120 Query 190534 ACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGA 190593 | |||||||| ||||| || | | |||| || |||| | ||||| ||||||| | Sbjct 29121 ATATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTA 29180 Query 190594 CTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACT 190653 |||| || |||||| | ||||||||||| || |||||| || |||| ||| || | Sbjct 29181 CTGTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCC 29240 Query 190654 CTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCT 190713 |||| ||| |||||| || ||||| ||||| || |||||| | || ||||| ||||| | Sbjct 29241 CTACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTT 29300 Query 190714 TTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 190773 |||| || || || ||||| || ||||| || || |||||||| ||||||||||| | Sbjct 29301 TTGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAA 29360 Query 190774 TGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 190833 ||| | ||| | | || || ||| | || ||||| | ||| | || || |||| Sbjct 29361 CCGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATG 29420 Query 190834 ACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAA 190893 ||||| | || ||||| | |||||||||||||||| || ||||| || || || |||| Sbjct 29421 ACTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAA 29480 Query 190894 AAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATG 190953 ||||||| |||| |||||||| | | | |||| |||| | || || || |||| Sbjct 29481 AAAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATG 29540 Query 190954 AGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 191004 | |||| | ||||||||||||| ||||| ||| | || ||||| || |||| Sbjct 29541 AAAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 >seq280 Length=85134 Score = 95.1 bits (104), Expect = 2e-14 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 165733 TGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGACGTG---TTAGTAGC 165789 |||||||||||||||| |||| | ||| ||||||||||||||| |||| | | | Sbjct 18740 TGGAAGAGTGGCAGAGCGGTTTAATGCTACAGTCTTGAAAACTGTCGTGGGTTCACGCCC 18799 Query 165790 ACCGTGAGTTCGAATCTCACCTCTTCCG 165817 |||||||||||||||||||||||||||| Sbjct 18800 ACCGTGAGTTCGAATCTCACCTCTTCCG 18827 >seq653 Length=1731 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||| ||||||||| | | |||||||||||| ||||| ||||||||| | ||||||||| Sbjct 375 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 434 Query 19389 TCCGATATTCTCCA 19402 |||| ||||||||| Sbjct 435 TCCGTTATTCTCCA 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634062840210000