Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq1716 93.3 1e-14 >seq1716 Length=36447 Score = 93.3 bits (102), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 33682 CCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTG 33741 ||||||| |||||| | ||||| | || || || ||||| |||||||| || || Sbjct 12042 CCTTCAATATAAACGGGGCGACCTTTTTTGAGGTATTCGCCAGCGATTTCAGCTAGTTTC 12101 Query 33742 CCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCA 33801 | | || || | |||||||||||||| || | ||||| |||| ||||| Sbjct 12102 CGGTACATGACAATATTGTGCCATTCAGTTTTTTCTTGTTTCTGGCCAGAT---TTATCT 12158 Query 33802 TTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTAT 33861 ||||| ||| | || |||| | |||||| || || |||||||||||||||| Sbjct 12159 TTCCAGTTTTCGGTGGTGGCAATGCTGAAGTTGGCGACTGCTTCGCCATTTGGCATGTAG 12218 Query 33862 CGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTAC 33911 || || || ||||| ||||||| | || | | |||||||| ||||| Sbjct 12219 CGTACCTCCGGGTCACGGCCTAAATTACCCATTAAAATTACTTTGTTTAC 12268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144969072839920