Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq100 529 2e-145 >seq100 Length=112360 Score = 529 bits (586), Expect = 2e-145 Identities = 686/948 (72%), Gaps = 0/948 (0%) Strand=Plus/Plus Query 160608 TACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTT 160667 ||| | || |||||||| || ||||||| || || || || |||| || || || Sbjct 40188 TACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTC 40247 Query 160668 ATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCT 160727 |||| | || | || ||||| || || ||||| || || || || || || || ||| Sbjct 40248 ATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCT 40307 Query 160728 GGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCA 160787 || || || | |||||||||||||| || | || || || ||||| ||| |||||| Sbjct 40308 GGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCA 40367 Query 160788 ATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAAT 160847 |||||| |||| || || || || ||||||||||| ||| ||||||||||| | || || Sbjct 40368 ATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAAC 40427 Query 160848 GGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGT 160907 |||||||| || |||||| | ||||| |||||| | | || | || || | ||| Sbjct 40428 GGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGT 40487 Query 160908 CGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCT 160967 || ||||||||| | || ||| | || |||||||| ||||| | ||||| | ||| Sbjct 40488 CGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCC 40547 Query 160968 GCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 161027 || || || ||||| || | || |||||| | | ||||| | || ||||| ||| Sbjct 40548 GCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTT 40607 Query 161028 TCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCA 161087 |||||||||||||| | || || || || || || ||||||||| | || ||||| || Sbjct 40608 TCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCC 40667 Query 161088 GAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGT 161147 || || ||||| | ||||| || || |||||| ||||| ||||| || || || ||| Sbjct 40668 GAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGT 40727 Query 161148 TCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACT 161207 || | || || |||||||| || || | || ||||| || | |||||||||| || Sbjct 40728 TCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCT 40787 Query 161208 GAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATC 161267 || | ||| || | || ||||| ||||| ||||| ||||||||||| || || || || Sbjct 40788 GAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATT 40847 Query 161268 GTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCC 161327 || |||||||| || || ||||| | | || || |||||||| || || ||||| Sbjct 40848 GTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCA 40907 Query 161328 CGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTT 161387 ||||| || ||||||||| | || |||||||| || || || || ||||| |||||| | Sbjct 40908 CGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTA 40967 Query 161388 GGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGAT 161447 || | || ||||| || ||| | |||||||| ||||| || || || || || ||| Sbjct 40968 GGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGAT 41027 Query 161448 GGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATG 161507 | || || | ||| | ||||| ||||| || || | || | || || ||||| || Sbjct 41028 AGCCAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATC 41087 Query 161508 GAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCT 161555 ||||||||||| || ||||||||||| |||||||| | ||||| ||| Sbjct 41088 GAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 471 bits (522), Expect = 5e-128 Identities = 712/1006 (71%), Gaps = 10/1006 (1%) Strand=Plus/Plus Query 163899 GACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 163958 || |||||||| ||| ||| | ||||| ||||| || |||||||| ||| | | ||| Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 163959 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGG 164018 || || ||| | || | || || ||| ||||||| | || ||||||||| |||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 164019 TACACCCACGGTCTCGCGTCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCT 164075 || ||||| || | || ||| | | || || ||| |||||| | || || ||| Sbjct 28706 TATACCCATGGCTTAGC---TAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCT 28762 Query 164076 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 164135 || ||||| || ||| || |||||| |||||| | ||||| | ||||| || || | Sbjct 28763 GTTTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCG 28822 Query 164136 CAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCAC 164195 || || | || | |||| || |||| || || ||| | ||||| || || ||| Sbjct 28823 CAAGGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACAC 28882 Query 164196 GGATCTTTCGCTCTGATCGGTTTCATGCTT-CGGCAGTTTGAAATTGCACGTCTTGTAGG 164254 ||| |||| || || || || || ||||| || || ||||||||||| || | ||||| Sbjct 28883 GGAGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGG 28941 Query 164255 TATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTT 164314 || || || ||||||||| | || || || | ||||| || | ||||| |||||| Sbjct 28942 AATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTT 29001 Query 164315 CCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGC 164374 | | || ||| | |||||| | || ||||| ||||| || ||||| || || || Sbjct 29002 TTTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGC 29061 Query 164375 GATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCA 164434 || || |||| | | ||| | ||||| |||||||| |||||| | || || ||||| Sbjct 29062 AATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCA 29121 Query 164435 TATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTAC 164494 ||||||||| ||||| || | | || | ||| | || ||||| |||||||||||||| Sbjct 29122 TATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTAC 29181 Query 164495 CGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCC 164554 || || |||||| | | ||||||||| || | ||||||| || | || || || Sbjct 29182 TGTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCC 29241 Query 164555 TACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTT 164614 ||||||| |||||| || || || ||||| || |||||| | || ||||| || ||||| Sbjct 29242 TACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTT 29301 Query 164615 TGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCAT 164674 ||| | ||||| |||||| | ||||| ||||| |||||||| ||||||||||| | Sbjct 29302 TGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAAC 29361 Query 164675 GGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGA 164734 || | ||| |||| | || || || | || || ||| | || | || || ||||| Sbjct 29362 CGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGA 29421 Query 164735 TTTTGTGTCTCAGGAGATTA-GAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGA 164793 ||| | || || || |||| |||||||||| ||||| ||||| || || |||||||| | Sbjct 29422 CTTTATTTCGCAAGA-ATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAA 29480 Query 164794 AGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACG 164853 | || || | | ||||||||| | | ||||||||| || |||||||||||| | Sbjct 29481 AAAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATG 29540 Query 164854 AATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACT 164899 || | | |||||||||| || || | || | || ||||| || Sbjct 29541 AAAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCT 29586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 161406 TTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTG 161465 || ||| | |||||||| ||||| || || || || || ||| | || || | ||| | Sbjct 112349 TTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAGAGTAATT 112290 Query 161466 AACACCTGGGCT-GACGT-TCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGC 161523 ||||| ||||| || | | | || | || || ||||| || ||||||||||| || | Sbjct 112289 AACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAATGCATGAAC 112230 Query 161524 GTAATGCTCACAACTTCCCTCTGGATCTCGCT 161555 |||||||||| ||||||| | | ||||| ||| Sbjct 112229 GTAATGCTCATAACTTCCAT-TAGATCTTGCT 112199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559312863186000