Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq689 116 5e-21 seq1490 98.7 1e-15 seq653 96.9 5e-15 >seq689 Length=1406 Score = 116 bits (128), Expect = 5e-21 Identities = 344/521 (66%), Gaps = 12/521 (2%) Strand=Plus/Plus Query 162307 CAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAG 162366 || || || || || || ||||| | ||| ||||| ||||| |||| || || | Sbjct 809 CAGCCGGACGAGATCTACAACCTGGCGGCCCAGAGCCACGTCCAGGTCAGCTTCGAGACG 868 Query 162367 CCTGAATACA-CAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCG 162425 |||||||||| ||||| | ||||||| ||||| || | |||| |||||| |||| Sbjct 869 CCTGAATACACCAGCA-ACGCCGACGCCACCGGCACCCTGCGCCTGCTGGAAGCCATCCG 927 Query 162426 TCTTCTTGGTATG--GAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTAT 162483 | || || || ||| | || | ||||||| || ||| || || ||| Sbjct 928 CATCCTGGGCCTGGAGAAGAAGAC--CCGGTTCTACCAGGCCTCGACCTCGGAACTGTAT 985 Query 162484 GGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTAT 162543 || || || ||||| || |||| || | || || | ||||| || ||| || Sbjct 986 GGCCTGGTCCAGGAAGTGCCGCAGAGCGAGAAGACCCCCTTCTATCCGCGCAGCCCCTAC 1045 Query 162544 GGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATA 162603 | | || || || ||||| | ||||||| | |||||| | || ||||| ||| Sbjct 1046 GCCGCCGCCAAGCTCTATGGCTACTGGATCGTGGTCAACTACCGCGAGGCCTATGGCATC 1105 Query 162604 CATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTC 162663 || ||| | ||| || || ||||| ||||| ||| | | | || ||||| |||||| Sbjct 1106 CACGCCAGCAACGGCATCCTGTTCAACCACGAGAGCCCGCTGCGGGGCGAGACCTTCGTC 1165 Query 162664 ACACGCAAGATCGTCCGAGCCTTGTCCCG--AATTAGTGTGGGACTCCAAAGTGATCTAC 162721 || ||||||||| ||| ||| ||| || || | ||| |||| | || Sbjct 1166 ACCCGCAAGATCACCCGCGCC--GTCGCGGCGATCAAGCAGGGCTTCCAGGACAAGCTCT 1223 Query 162722 AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGT-AGAGGCT 162780 | || || || ||| | ||| || |||||||| |||||| || || || | ||| Sbjct 1224 ATCTCGGCAATCTCGACGCCAAGCGCGACTGGGGCCACGCCCGCGAATATGTCCGCGGC- 1282 Query 162781 ATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGT 162821 |||||| ||||||| |||||||| | ||| || || || || Sbjct 1283 ATGTGGCTGATGCTGCAGCAAGACACGCCGGACGACTACGT 1323 >seq1490 Length=214893 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142790 TTCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCG 142849 ||||||| ||||||||| ||| ||||| ||||||||||||||||| |||||||||||| Sbjct 76286 TTCGGGGGTTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCAACGGTTCG 76345 Query 142850 AGTCCGTTATTCTCCACCA 142868 | ||||||| |||||||| Sbjct 76346 ATCCCGTTATCCTCCACCA 76364 >seq653 Length=1731 Score = 96.9 bits (106), Expect = 5e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||| ||||| ||||| ||||| ||||||||||||| Sbjct 375 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 434 Query 142852 TCCGTTATTCTCCACCAA 142869 |||||||||||||||||| Sbjct 435 TCCGTTATTCTCCACCAA 452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691440487385400