Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1448 107 6e-21 >seq1448 Length=56290 Score = 107 bits (118), Expect = 6e-21 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| ||||||| ||| | ||| ||| ||| | ||||||||||| ||||||||||| | Sbjct 4154 GGATGACGTCAGATCGTTATGACCCGTATAAACTGGGCTACACATGTGCTACAATGATAA 4213 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 ||||| ||| || | | | ||||||||| ||| || || | ||| ||| Sbjct 4214 TTACAATGGGATGCAATGATGTAAATCGGAGCAAATCCTTAAAAATTATTTT-AGTACGG 4272 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 ||| ||| ||||| | |||||||||| |||||||||||||||||| ||||||| | Sbjct 4273 ATTATAGATTGCAATTTATCTATATGAAGGTGGAATCGCTAGTAATCGCGAATCAGCACG 4332 Query 477 CTACGGTGAAT 487 |||||||| Sbjct 4333 TCGCGGTGAAT 4343 Score = 107 bits (118), Expect = 6e-21 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| ||||||| ||| | ||| ||| ||| | ||||||||||| ||||||||||| | Sbjct 17614 GGATGACGTCAGATCGTTATGACCCGTATAAACTGGGCTACACATGTGCTACAATGATAA 17555 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 ||||| ||| || | | | ||||||||| ||| || || | ||| ||| Sbjct 17554 TTACAATGGGATGCAATGATGTAAATCGGAGCAAATCCTTAAAAATTATTTT-AGTACGG 17496 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 ||| ||| ||||| | |||||||||| |||||||||||||||||| ||||||| | Sbjct 17495 ATTATAGATTGCAATTTATCTATATGAAGGTGGAATCGCTAGTAATCGCGAATCAGCACG 17436 Query 477 CTACGGTGAAT 487 |||||||| Sbjct 17435 TCGCGGTGAAT 17425 Score = 107 bits (118), Expect = 6e-21 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| ||||||| ||| | ||| ||| ||| | ||||||||||| ||||||||||| | Sbjct 52794 GGATGACGTCAGATCGTTATGACCCGTATAAACTGGGCTACACATGTGCTACAATGATAA 52853 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 ||||| ||| || | | | ||||||||| ||| || || | ||| ||| Sbjct 52854 TTACAATGGGATGCAATGATGTAAATCGGAGCAAATCCTTAAAAATTATTTT-AGTACGG 52912 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 ||| ||| ||||| | |||||||||| |||||||||||||||||| ||||||| | Sbjct 52913 ATTATAGATTGCAATTTATCTATATGAAGGTGGAATCGCTAGTAATCGCGAATCAGCACG 52972 Query 477 CTACGGTGAAT 487 |||||||| Sbjct 52973 TCGCGGTGAAT 52983 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/106 (81%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| Sbjct 17896 TACGACCGCAAGGTTGAAAATCAAAGGAATTGGCGGGGACTAGTTTTAGCGGTGGAGCAT 17837 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACA 106 |||||||||| || |||| | ||||||||| | | |||||| Sbjct 17836 GTGGTTTAATCTGATAGTCCGCGTAAAACCTTACC-AGTTTTGACA 17792 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/106 (81%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| Sbjct 52512 TACGACCGCAAGGTTGAAAATCAAAGGAATTGGCGGGGACTAGTTTTAGCGGTGGAGCAT 52571 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACA 106 |||||||||| || |||| | ||||||||| | | |||||| Sbjct 52572 GTGGTTTAATCTGATAGTCCGCGTAAAACCTTACC-AGTTTTGACA 52616 Score = 89.7 bits (98), Expect = 2e-15 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||| Sbjct 3873 TACGACCGCAAGGTTGAAAATCAAAGGAATTGGC-GGGACTAGTTTTAGCGGTGGAGCAT 3931 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACA 106 |||||||||| || |||| | ||||||||| | | |||||| Sbjct 3932 GTGGTTTAATCTGATAGTCCGCGTAAAACCTTACC-AGTTTTGACA 3976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503978222080