Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1448 77.0 8e-12 >seq1448 Length=56290 Score = 77.0 bits (84), Expect = 8e-12 Identities = 153/220 (70%), Gaps = 15/220 (7%) Strand=Plus/Minus Query 179 TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 |||||||| || | ||| |||| | ||||||||||| ||||||||| || | Sbjct 5258 TTAAGCTT-GCTATATAAATAAAGTAGTTGACCCATTATGCAAAAGGTATATTGTTGCTT 5200 Query 239 A--ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCC 296 | ||||| ||| | | || ||||| ||| | ||||| |||| ||||| Sbjct 5199 ATTACAAA----GCTTCAATTGATTGTAAACATTAGATTTCAATATCT-TTTCA-----A 5150 Query 297 TCTCCGGGGTTC-TTTTCGCCTTTCCCTCACGGTACTA-GTTCACTATCGGTCAGTCAGT 354 | || | ||| ||||| |||||| |||||| ||||| || | || ||||| | | | | Sbjct 5149 TTTCACGAATTCTTTTTCACCTTTCTCTCACGATACTATGTACGCTTTCGGTTATTTAAT 5090 Query 355 AGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACA 394 ||||||| || ||||||||| |||| ||||||| ||| Sbjct 5089 TATATTTAGGTTTAGAGGATGGTTCCCCTATATTCAAACA 5050 Score = 77.0 bits (84), Expect = 8e-12 Identities = 153/220 (70%), Gaps = 15/220 (7%) Strand=Plus/Plus Query 179 TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 |||||||| || | ||| |||| | ||||||||||| ||||||||| || | Sbjct 16510 TTAAGCTT-GCTATATAAATAAAGTAGTTGACCCATTATGCAAAAGGTATATTGTTGCTT 16568 Query 239 A--ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCC 296 | ||||| ||| | | || ||||| ||| | ||||| |||| ||||| Sbjct 16569 ATTACAAA----GCTTCAATTGATTGTAAACATTAGATTTCAATATCT-TTTCA-----A 16618 Query 297 TCTCCGGGGTTC-TTTTCGCCTTTCCCTCACGGTACTA-GTTCACTATCGGTCAGTCAGT 354 | || | ||| ||||| |||||| |||||| ||||| || | || ||||| | | | | Sbjct 16619 TTTCACGAATTCTTTTTCACCTTTCTCTCACGATACTATGTACGCTTTCGGTTATTTAAT 16678 Query 355 AGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACA 394 ||||||| || ||||||||| |||| ||||||| ||| Sbjct 16679 TATATTTAGGTTTAGAGGATGGTTCCCCTATATTCAAACA 16718 Score = 77.0 bits (84), Expect = 8e-12 Identities = 153/220 (70%), Gaps = 15/220 (7%) Strand=Plus/Minus Query 179 TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 |||||||| || | ||| |||| | ||||||||||| ||||||||| || | Sbjct 53897 TTAAGCTT-GCTATATAAATAAAGTAGTTGACCCATTATGCAAAAGGTATATTGTTGCTT 53839 Query 239 A--ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCC 296 | ||||| ||| | | || ||||| ||| | ||||| |||| ||||| Sbjct 53838 ATTACAAA----GCTTCAATTGATTGTAAACATTAGATTTCAATATCT-TTTCA-----A 53789 Query 297 TCTCCGGGGTTC-TTTTCGCCTTTCCCTCACGGTACTA-GTTCACTATCGGTCAGTCAGT 354 | || | ||| ||||| |||||| |||||| ||||| || | || ||||| | | | | Sbjct 53788 TTTCACGAATTCTTTTTCACCTTTCTCTCACGATACTATGTACGCTTTCGGTTATTTAAT 53729 Query 355 AGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACA 394 ||||||| || ||||||||| |||| ||||||| ||| Sbjct 53728 TATATTTAGGTTTAGAGGATGGTTCCCCTATATTCAAACA 53689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241582021632