Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proteromonas_20lacertae_20[genbank_20GCA_5F002245135.1_202017-08-09] 1,448 sequences; 52,248,569 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1448 174 5e-41 >seq1448 Length=56290 Score = 174 bits (192), Expect = 5e-41 Identities = 244/336 (73%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| | |||||| |||| | |||||||||| ||| |||| ||| | |||||| Sbjct 3253 GATTAGGTTGTTGGTGAGGTCAGAGCTTACCAAGCCGATGATCTTTAGTTGGATTGAGAG 3312 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 || | |||||||||| ||||||||| || |||| || | || |||||||| | Sbjct 3313 ATCGACCAGCCACATTGGGACTGAGACAAGGCCCAAGCTTTTTTAA-AGCCAGCAGTGAG 3371 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT- 345 |||||||| |||||| | |||| |||| |||||| | | |||| ||||||||| Sbjct 3372 GAATATTGGACAATGAACGAAAGTTTGATCCAGCAATTCTACATGAGTGATGAAGGCTAA 3431 Query 346 -TCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | |||||||| |||| | | |||| ||| |||||| |||| | | ||| ||| Sbjct 3432 ATTTAGTCGTAAAACTCTATAGTATAGGAGGATGATGACGTTACTATACTAA-AAGTCCC 3490 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 || || | |||||||||||| ||||| ||||| ||||| |||||||| || |||| Sbjct 3491 AGCAAATTTCGTGCCAGCAGCTGCGGTTATACGAGAGGGGCAAGCGTTATTCGTCTTTAC 3550 Query 465 TGGGGCGTAAAGGGTGCGT-AGGTGGTTTCTTAAGT 499 | ||||||||| || | ||||| ||| |||||| Sbjct 3551 T-GGGCGTAAAAAGTTTTTCAGGTGATTTTTTAAGT 3585 Score = 174 bits (192), Expect = 5e-41 Identities = 244/336 (73%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| | |||||| |||| | |||||||||| ||| |||| ||| | |||||| Sbjct 18516 GATTAGGTTGTTGGTGAGGTCAGAGCTTACCAAGCCGATGATCTTTAGTTGGATTGAGAG 18457 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 || | |||||||||| ||||||||| || |||| || | || |||||||| | Sbjct 18456 ATCGACCAGCCACATTGGGACTGAGACAAGGCCCAAGCTTTTTTAA-AGCCAGCAGTGAG 18398 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT- 345 |||||||| |||||| | |||| |||| |||||| | | |||| ||||||||| Sbjct 18397 GAATATTGGACAATGAACGAAAGTTTGATCCAGCAATTCTACATGAGTGATGAAGGCTAA 18338 Query 346 -TCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | |||||||| |||| | | |||| ||| |||||| |||| | | ||| ||| Sbjct 18337 ATTTAGTCGTAAAACTCTATAGTATAGGAGGATGATGACGTTACTATACTAA-AAGTCCC 18279 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 || || | |||||||||||| ||||| ||||| ||||| |||||||| || |||| Sbjct 18278 AGCAAATTTCGTGCCAGCAGCTGCGGTTATACGAGAGGGGCAAGCGTTATTCGTCTTTAC 18219 Query 465 TGGGGCGTAAAGGGTGCGT-AGGTGGTTTCTTAAGT 499 | ||||||||| || | ||||| ||| |||||| Sbjct 18218 T-GGGCGTAAAAAGTTTTTCAGGTGATTTTTTAAGT 18184 Score = 174 bits (192), Expect = 5e-41 Identities = 244/336 (73%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| | |||||| |||| | |||||||||| ||| |||| ||| | |||||| Sbjct 51892 GATTAGGTTGTTGGTGAGGTCAGAGCTTACCAAGCCGATGATCTTTAGTTGGATTGAGAG 51951 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 || | |||||||||| ||||||||| || |||| || | || |||||||| | Sbjct 51952 ATCGACCAGCCACATTGGGACTGAGACAAGGCCCAAGCTTTTTTAA-AGCCAGCAGTGAG 52010 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT- 345 |||||||| |||||| | |||| |||| |||||| | | |||| ||||||||| Sbjct 52011 GAATATTGGACAATGAACGAAAGTTTGATCCAGCAATTCTACATGAGTGATGAAGGCTAA 52070 Query 346 -TCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | |||||||| |||| | | |||| ||| |||||| |||| | | ||| ||| Sbjct 52071 ATTTAGTCGTAAAACTCTATAGTATAGGAGGATGATGACGTTACTATACTAA-AAGTCCC 52129 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 || || | |||||||||||| ||||| ||||| ||||| |||||||| || |||| Sbjct 52130 AGCAAATTTCGTGCCAGCAGCTGCGGTTATACGAGAGGGGCAAGCGTTATTCGTCTTTAC 52189 Query 465 TGGGGCGTAAAGGGTGCGT-AGGTGGTTTCTTAAGT 499 | ||||||||| || | ||||| ||| |||||| Sbjct 52190 T-GGGCGTAAAAAGTTTTTCAGGTGATTTTTTAAGT 52224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497578314752