Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq108 241 1e-58 seq3 132 4e-26 >seq108 Length=147947 Score = 241 bits (266), Expect = 1e-58 Identities = 1176/1844 (64%), Gaps = 48/1844 (3%) Strand=Plus/Minus Query 65120 AGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAAT 65179 || |||||||| |||||||| || || ||| |||||||||||||| || | || Sbjct 14172 AGGTAGTACATTCCGGTCTTCAGTCCCTTCTTCCACGCATAGAAATGCATGGAGGTCAAC 14113 Query 65180 TTTGCATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA 65239 || | || ||||| | || | ||||| ||| ||||| ||| | | Sbjct 14112 TTCTTCGACGAAGGATCGGCAATGTGAACATTCAGACTCTGGCTCTGGCAGATAAAGGGG 14053 Query 65240 CCACGATCTGCAGCCATGTC---AATGATACGACGTCCCGATATCTCCCAGACGGTCTTG 65296 |||||| ||||||| ||| |||||| || || || | ||||||||| |||||| Sbjct 14052 GAACGATCGGCAGCCAAGTCGAGAATGATTCGTTGTG--GA-ACCTCCCAGACAGTCTTG 13996 Query 65297 TACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCA 65356 |||| || | | | ||||| || || || | ||| || || ||||| || Sbjct 13995 TACACATCTCGGAGTTTCTTGGGAATTTCTTCGATCTTCTGCACCGATCCACGGTCAGCG 13936 Query 65357 ATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGA--TAAGATGTTGAACCA 65414 || | ||| || || | ||||| ||| | ||| || ||| | |||| | | || Sbjct 13935 ATGAGGCGGTTGCGGAGTGACTCGTTCCAAATACC--AAGCGAGGTCAGATCGCGCAACA 13878 Query 65415 AGTGACGATTGATGACT-TGG--AACTCGCCGGACAGTACACGACGGACATAGATGTTGG 65471 |||| ||| |||| | | ||||| || | || ||||| ||| ||||| |||| Sbjct 13877 AGTGC---TTGTTGACAATCGTAAACTCTCCTGCCAAAACACGTCGGTTGTAGATATTGG 13821 Query 65472 ACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCA 65531 | || | || || ||| |||| || | || ||||| || ||||| || |||| Sbjct 13820 AGGTAAATGGCTCGGTACTTTCGTTGTTACCCAATATCTGGGCGGTGGATGCGGTGGGCA 13761 Query 65532 TGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACG-CAATTCG 65590 | ||||| ||||||| ||||| | || ||||| | |||| | || | ||||| | Sbjct 13760 TTGGAGCTACCAACAGGGAGTTCCTCATTCCGTGCTCGGCAATCTC-TGCCTTCAATTTG 13702 Query 65591 TCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTT 65650 |||||| ||| || |||| | ||| ||||| || ||| || || Sbjct 13701 GCCCAGTYCCAA--CG----ATCGCTGGGTGTRACGCCCCACAAGTCAAATTGTAGTTTT 13648 Query 65651 CCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA 65710 || || | || || ||| | |||| ||||| |||||| || ||||| | Sbjct 13647 CCCTGGCTCACGGGAGACCCGGGATAACTCTCGTAGTGTCCCTCAGTTTTCGCAAGATCG 13588 Query 65711 CAGCTGGTCTCGAGTGC-GGCA---AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTC 65766 || || | ||| | |||| || ||||||||||| |||||| || || | || Sbjct 13587 CAACTCGC----AGTACAGGCACCGAAGTAAATGGTCTCAAAAATGTCGCGGTTTAATTG 13532 Query 65767 ACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTG 65826 | |||||| ||| | || | | || | |||||| || |||| || || Sbjct 13531 AGCTGCCTCGGGAGAGTCGAAGGGGAGCTTGAGCATGGCAAAAGCATCTGCCAATCCCTG 13472 Query 65827 AACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTA 65886 ||| |||| ||| || ||||| || || || || | | || || || | |||||| Sbjct 13471 AACACCAAGACCAATTGGACGGTGCTTCATGTTCGAGTATTTGGCTTCGGGAATAGGGTA 13412 Query 65887 GTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCA-CATGCACGATACGTCGCA 65945 | ||||| ||||| | | ||||| || | |||| | ||| | | | |||| | Sbjct 13411 GAAATTGCGGTCGATGACTCTATTCAGGTTTCTGGTCAAAATCAT-CGCAACCTGTCGAA 13353 Query 65946 ATTGTTCGAAATC-AAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 | |||||| || |||||| | || | || | ||| | || ||||||| Sbjct 13352 GCTTTTCGAAGTCGAAAATGAGTGGGCC-ATTGTTGGTGAGAGGTCGTACCAACTTGG-- 13296 Query 66005 AGGGCAAGA-GATG-CGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAA 66062 || | || | || | |||||||| || || | || || |||| || |||| |||| Sbjct 13295 AGAGACTGATGCTGGCAAGGTTGCAAACGGCAGTTTCCTCTGGAGAAGTGTACTGAACAA 13236 Query 66063 TTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGAT 66122 | ||||| || || || || || ||||| ||||| || |||||||| |||| | Sbjct 13235 TCTCGGTACATAGGTTCGAACAACGAATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGT 13176 Query 66123 TGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGG 66182 |||| ||||||||||| |||||| || || || || || || || || || | ||| | Sbjct 13175 TGCAGTGATCCTTGTACACCATGTAAGGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTG 13116 Query 66183 CGTGCCAAAGAGC-GC-GTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATG 66240 || ||| |||| || | |||| | || | || | |||| ||||| | Sbjct 13115 CGAACCA--GAGCTGCTGCGCCTGAATTGTTTGGCGACCCTTGCCTTCTTTCTCGTACTT 13058 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 |||||| | | | ||| | || |||| |||| || |||| || || Sbjct 13057 TTCGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGG 12998 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATC 66358 |||||||| || ||| || | || || ||||| ||| || || ||||| ||| Sbjct 12997 ACACATCAACGTCCATGTCCCGT--TGGCCTTGACACGTTCCATGAACAGGTCAGGGATC 12940 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 ||||| | ||| || | ||| ||||| || | | || | ||||| |||||||| | Sbjct 12939 CAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGA 12880 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || | || ||||||| || || ||||| || |||| ||| ||||| | ||| | Sbjct 12879 TCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTG 12820 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || ||||| ||||| || |||||||| | ||| |||||||||||||||||||| || Sbjct 12819 CGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGG 12760 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 |||| || || ||| | || ||||| || ||| |||| | || || || | | Sbjct 12759 ACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTG 12700 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTC 66658 || ||||||||| ||||| || |||||| || | || || | ||| Sbjct 12699 TGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGTG 12640 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | ||||| || |||||||| |||| || |||| || | || || | || Sbjct 12639 TCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAAACAAGAGGACATCTGA 12580 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 || ||| || |||| ||||||||| ||||| || || || ||||| | || Sbjct 12579 GGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAG 12520 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACAT 66838 | | || || ||||| | ||| || || | || || ||||| || | || Sbjct 12519 AGGCCTTTATAGGTCTCCAAGACCCGCTCGATATCATCTCCGTGAATTCCAACGGCGACG 12460 Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAG 66898 ||||||| | | | || || ||||| | | | | |||| | | |||||||| Sbjct 12459 CGCATCAACATGCACTGTGGTCGTTCTGCGATCTTGCCATTGAGCTTRAGCAAGTAGGAC 12400 Query 66899 CGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTT 66942 || ||||| || | ||||||||| ||| | ||||||||| Sbjct 12399 TTCTCGAGGGTTTTAAAACCAAAGTAATCGTACTCGAAATCGTT 12356 >seq3 Length=497493 Score = 132 bits (146), Expect = 4e-26 Identities = 410/633 (65%), Gaps = 6/633 (1%) Strand=Plus/Minus Query 66016 TGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAG 66075 ||| || ||||| ||||| | ||| || | ||||| | || |||||| ||||| || Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 66076 ATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTT 66135 ||||||||| | || || || | ||||| ||| ||||| || ||| |||||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 66136 GTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGC 66195 || | |||||| ||||| || || || | |||||| || | || ||| ||| | | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 66196 GCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTC 66255 || || || | || || | |||| |||||| | ||| || || | || Sbjct 139658 TCGGGCAGGCATCTGGCGAACATATTTTCCTTCTTTTTCGTATTTTTCATATAGTTCCTC 139599 Query 66256 GAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA 66315 || || || | || | || | || || | | ||||||||||| ||| Sbjct 139598 AAAYTCTTTTCCGCTGCACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTCCA 139539 Query 66316 ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAG 66375 | |||| | ||||| || |||||| | |||||| ||||| ||| |||| || || Sbjct 139538 GTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAATAG 139479 Query 66376 ATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGAT 66435 ||| || ||||| || || || | ||||| || || || | || | || || || Sbjct 139478 ATCTCGAGCTCGCTGTTCTTCTTTCCCGTGGTTCTTTTTCAGATTAAGAACGTCGAAAAT 139419 Query 66436 GTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 ||| | |||||| ||||| | ||| | || || | || || || || || ||||| Sbjct 139418 GTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTCCTTG 139359 Query 66496 GTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 || ||||| | || |||| || | || || | ||| || || || || || || Sbjct 139358 ATCAACGTATCTCGCTGTCACATCGT---AAACGCGAAGCATAGGAACCAGTCCATTGGA 139302 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 | || || || | |||||| || || | || || |||| ||| || ||| || Sbjct 139301 AGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATCC 139242 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 ||| ||||| || | || || ||| |||| || Sbjct 139241 AATTCCACCAGCAGATTTGGATATGACAGCGCA 139209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562674949360