Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq217 621 4e-173 >seq217 Length=78499 Score = 621 bits (688), Expect = 4e-173 Identities = 739/1000 (74%), Gaps = 2/1000 (0%) Strand=Plus/Plus Query 159792 CGTGGGAATCATTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGT 159851 |||||||| ||||| | | ||| | || ||| | |||||||| || ||||||||| Sbjct 40570 CGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGT 40629 Query 159852 TCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATC-TGCTTCATCGTCGCCTTC 159910 |||| | ||| |||||||||| | || ||| | ||| |||||||| || || Sbjct 40630 TCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCATTT 40688 Query 159911 ATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATG 159970 || || || || ||||||||||| || || ||||| ||||| || || || || || | Sbjct 40689 ATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTT 40748 Query 159971 TACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCAC 160030 |||||||| ||||||||| | || | || | || |||| ||||||||| || | ||| Sbjct 40749 TACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCAC 40808 Query 160031 TTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTC 160090 ||||| ||| |||||||||| || || | ||||| ||| | || ||||| || || | | Sbjct 40809 TTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTAC 40868 Query 160091 CAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAA 160150 ||| | || || | |||||||| |||| | | | || ||||| |||||||||||| Sbjct 40869 CAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAA 40928 Query 160151 CTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCT 160210 || || || || ||||| |||||||| ||||| | |||||||| ||| || || || || Sbjct 40929 CTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCA 40988 Query 160211 GCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATG 160270 || || | ||||| |||||| ||||||| | || || || |||||| |||| ||| Sbjct 40989 GCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATG 41048 Query 160271 CCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATC 160330 |||||||||||| || || || |||| ||| | || ||||| || || ||||| ||| Sbjct 41049 CCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATC 41108 Query 160331 CTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCT 160390 |||||||| ||| | || ||| ||| ||||| || || ||||| |||||| ||||||| Sbjct 41109 CTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCC 41168 Query 160391 GCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCC 160450 || ||||| || ||||| |||||||| | | || | || || || |||| || ||| Sbjct 41169 GCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCC 41228 Query 160451 CAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACAT 160510 || | || |||||||| || || || || || || |||||||| ||||| || || Sbjct 41229 ACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCAC 41288 Query 160511 GGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCAC 160570 || ||||| || ||| | ||||||||||| || || || |||||||| || |||| ||| Sbjct 41289 GGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCAC 41348 Query 160571 TTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACC 160630 |||||| | ||| |||||||| | || ||||||| ||| ||| | ||||| || ||| Sbjct 41349 TTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACC 41408 Query 160631 ATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAA 160690 ||||| ||||| ||||| || ||||||||||||||| | || | ||| | | |||| Sbjct 41409 ATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGT 41468 Query 160691 GTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCAC 160750 || | ||||| ||||| ||| | | ||||| || | ||| || ||||| ||||||||| Sbjct 41469 GTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCAC 41528 Query 160751 GAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTG 160790 || ||||| ||||| ||||| ||||| || | ||| ||| Sbjct 41529 GAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551368425472200