Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq217 728 0.0 >seq217 Length=78499 Score = 728 bits (806), Expect = 0.0 Identities = 765/1002 (76%), Gaps = 6/1002 (1%) Strand=Plus/Plus Query 188835 TGGCACTTGGGAATCATTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGG 188894 || ||| |||||| ||||| | | ||| |||| || ||||||| || || |||| Sbjct 40565 TGCCACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGG 40624 Query 188895 TTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACCATC-TGCTTCATCGTCG 188953 |||||||||| | ||| |||| || ||||| || || | |||| |||||||| | Sbjct 40625 TTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGC-AGCATCATGCTTCATTACTG 40683 Query 188954 CCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCAC 189013 | ||| | || ||||| ||||| |||||||| || ||||||||||| || || || || | Sbjct 40684 CATTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTC 40743 Query 189014 TCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTC 189073 | | || || || ||||||||| | || |||| ||||||| | ||||||||| || Sbjct 40744 TTCTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGA 40803 Query 189074 TTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTC 189133 | |||||||||||| | |||||||| ||||| | || || ||| | |||||||| || | Sbjct 40804 TGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGAC 40863 Query 189134 CTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCAT--CTACGCCTACATGGGTCGTGA 189191 | | |||| |||| || | |||||||| |||| | || || |||||||| ||||| Sbjct 40864 CCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCG--TACATGGGCCGTGA 40921 Query 189192 GTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACC 189251 ||||||||| || || || ||||| |||||||||||||| | |||| | ||| ||||| Sbjct 40922 GTGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACC 40981 Query 189252 TGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGA 189311 ||||||||| || |||| ||||| || ||| || |||| ||||| |||||| || Sbjct 40982 TGTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGA 41041 Query 189312 CGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCA 189371 | ||||| | |||||||| ||||||||||||| |||| | |||||||| || ||||| Sbjct 41042 TGGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCA 41101 Query 189372 CAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACT 189431 ||||||||| |||||||| | || ||| ||||| |||||||||||||| || || | Sbjct 41102 CAACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTT 41161 Query 189432 GTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAAC 189491 ||||||||| ||||| || || || ||||| || || || | ||||||||||| |||| Sbjct 41162 GTTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAA 41221 Query 189492 CGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGC 189551 ||| ||| || | || ||||||||||| || ||||| ||||| |||||||| || || Sbjct 41222 CGAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGC 41281 Query 189552 TGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTC 189611 ||||| || || || || ||||| ||||||||||| || |||||||||||||| ||| | Sbjct 41282 CGCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGC 41341 Query 189612 ACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGT 189671 |||||||||||| | ||| |||||| || |||||||||||| |||||| | || || Sbjct 41342 TCTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGT 41401 Query 189672 CAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCA 189731 | ||||||||| ||||||||||| || ||||||||||| || | | | || | Sbjct 41402 CTCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGA 41461 Query 189732 AGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGT 189791 || ||||| | ||||| ||||| ||| | |||||||||| | |||||| ||||| || Sbjct 41462 GGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGT 41521 Query 189792 CATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGC 189833 |||||| || ||||| ||||| ||||| ||||||||| |||| Sbjct 41522 CATGCACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGC 41563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634071289326000