Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq217 749 0.0 >seq217 Length=78499 Score = 749 bits (830), Expect = 0.0 Identities = 769/1003 (77%), Gaps = 2/1003 (0%) Strand=Plus/Plus Query 160558 CCACTTGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTT 160617 |||| |||||| |||||| | | ||| | || || |||| || |||||| |||||| Sbjct 40567 CCACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTT 40626 Query 160618 GGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGT 160677 |||||||| | ||| |||||||||| | || ||| | ||||| |||||||| | Sbjct 40627 GGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCAT 40686 Query 160678 TCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGA 160737 | |||| || || || |||||||| ||||| ||||| ||||| ||||| || || || Sbjct 40687 TTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTC 40746 Query 160738 TGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTC 160797 | || || || ||||||||| | || | || | ||||||| ||||||||| || | | Sbjct 40747 TTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGC 40806 Query 160798 ACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTT 160857 ||||||||||| ||||||||||||| || | || |||||| | ||||| || || || | Sbjct 40807 ACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCT 40866 Query 160858 ACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGC-TACATGGGTCGCGAGTGG 160916 ||||| |||| || | |||||||| |||| | | || | |||||||| || |||||| Sbjct 40867 ACCAATTGGTTGTGATGCACTTCCTTCTCGG-AGTTGCTTCGTACATGGGCCGTGAGTGG 40925 Query 160917 GAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTT 160976 |||||||| || |||||||| ||||| || ||||| | ||||||| || ||||||||| Sbjct 40926 GAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTT 40985 Query 160977 GCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGT 161036 || || || | || || |||||| ||| || | || ||||| |||||| ||||| Sbjct 40986 GCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGC 41045 Query 161037 ATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAAC 161096 ||||| || |||||| || ||||||||||||||| | ||||||||||| || |||||| Sbjct 41046 ATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAAC 41105 Query 161097 ATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTC 161156 ||||| |||||||| | || ||| || ||||| ||||||||||| || ||| ||||| Sbjct 41106 ATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTC 41165 Query 161157 TCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAG 161216 ||||| ||||| || || || |||||||| || || | ||||||||||| || ||||| Sbjct 41166 TCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAA 41225 Query 161217 TCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCT 161276 ||| || | || ||||||||||| || ||||| || ||||||||||| ||||| ||| Sbjct 41226 TCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCT 41285 Query 161277 CATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTG 161336 || || ||||| || || || |||||||||||||| || ||||||||||| ||| | | Sbjct 41286 CACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTT 41345 Query 161337 CACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCC 161396 ||||||||| | || |||||||| | |||||||||| ||| || | ||||||||| Sbjct 41346 CACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCC 41405 Query 161397 ACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGC 161456 |||||||| |||||||| ||||||||||||||||||||| | |||| || |||| Sbjct 41406 ACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGA 41465 Query 161457 AAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATG 161516 ||| | ||||||||||| ||| | | || ||||| | ||||| ||||| || ||| Sbjct 41466 CGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATG 41525 Query 161517 CACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTG 161559 ||||| ||||||||||| ||||| ||||| ||| | ||| ||| Sbjct 41526 CACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559320316231600