Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq6297 134 1e-29 seq12131 123 3e-26 seq13665 114 1e-23 >seq6297 Length=2229 Score = 134 bits (148), Expect = 1e-29 Identities = 153/200 (77%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| |||||| ||||| ||| Sbjct 373 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAATCGGAC 314 Query 61 TTCGTTAGATTGACTTATCTG-ACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTC 119 ||||||| | ||||| ||| | |||| || | || |||| ||| || ||||| | Sbjct 313 CTCGTTAGTTCAACTTAGCTGTATATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCC 254 Query 120 CTCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATG-CGCAT 178 ||||||| | |||||||| |||||| ||||||| || | ||| || ||| |||| Sbjct 253 CTCTCGGCCTTGGACCTTAGCACCCAAAGCCTCACT-GCCGGCCATATCT-ATGTAGCAT 196 Query 179 TCGGAGTTTGGCAGGACTTG 198 |||||||| | | ||| ||| Sbjct 195 TCGGAGTTCGTCTGGATTTG 176 >seq12131 Length=1185 Score = 123 bits (136), Expect = 3e-26 Identities = 147/198 (74%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| ||||| || | || Sbjct 737 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCAATGCAGTTCAAC 678 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 |||| | ||||| | | |||| || | || ||| ||| || ||||| || Sbjct 677 CGCGTTGCTTCAACTTAGCATATATTTGGGGACCTTAGCTGTTGGTCTGGGTTCTTTCCC 618 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180 |||||| || |||||||| |||||||||||||||| || ||| | | || |||||| Sbjct 617 TCTCGGACATGGACCTTAGCACCCATGCCCTCACT-GCCGACCATCATTTATTAGCATTC 559 Query 181 GGAGTTTGGCAGGACTTG 198 |||||||| ||||| ||| Sbjct 558 GGAGTTTGTCAGGAATTG 541 >seq13665 Length=1045 Score = 114 bits (126), Expect = 1e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| |||||| ||||| ||| Sbjct 859 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAATCGGAC 800 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||||| | ||||| ||| | || || | || |||| ||| || ||||| || Sbjct 799 CTCGTTAGTTCAACTTAACTGTAACTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 740 Query 121 TCTCGGGCACG-GACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATT 179 |||| ||| || ||||||| ||||| ||||||| || ||| | | ||||| Sbjct 739 TCTC-GGCGCGTGACCTTAGCACCCCGCGCCTCACT-GCCGATCAT-ATTATATAGCATT 683 Query 180 CGGAGTTTGGCAGGACTTG 198 ||||||||| | ||| ||| Sbjct 682 CGGAGTTTGTCTGGATTTG 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537414912888