Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq18625 163 5e-38 seq24174 141 2e-31 seq6297 136 8e-30 seq14940 100 5e-19 seq17759 86.0 1e-14 seq20727 82.4 1e-13 seq12131 82.4 1e-13 >seq18625 Length=738 Score = 163 bits (180), Expect = 5e-38 Identities = 230/315 (73%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 18 TTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACGTTC 77 ||||||| |||||| || ||||| ||||| ||||||| | |||||||| | | Sbjct 236 TTAGCGGGTTTTCTTGGAAGTCTGGTTACCTGCACTATCC-ACGCCCCCGAAGGTT-TGC 293 Query 78 CATACTGTCAA-TCTCGACTCTTTCCGTGGATTTGCCTGCGGAAATCAACGTCTACACTC 136 |||| ||| | || | | || | |||||||||| | | | | |||| | | Sbjct 294 GGTACTATCATGTTTCAGCACAGTCTGCGGATTTGCCTACAGTC-TGTATACCTACGCAC 352 Query 137 TTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCTC 196 || ||| |||||||||||| ||||| ||||||| || |||| |||| || | | Sbjct 353 TTCAACGAACTATTCCGTCAGTTCGCGGCAGTGTCACTACTCCGTCACCACATCGCAGTT 412 Query 197 AAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGG-TCTCGCCGTTCGGCTGAACCT 255 | | |||| |||||| ||||| || | ||||||| | || || ||||| || ||| Sbjct 413 ATAAAAAGTACGGGAATATTAACCCGTTGT-CCATCGGCTATCTCCTTTCGGATGCGCCT 471 Query 256 TATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGA 315 || | ||||||| |||||||||||||||||| ||||||||||||||| ||||||||| | Sbjct 472 TAGGCCCCGACTGACCCTGATCCGATTAGCGTTGATCAGGAAACCTTGGTCTTTCGGTGG 531 Query 316 GGGGGTTTCCCACCC 330 | ||||||||||||| Sbjct 532 GCGGGTTTCCCACCC 546 >seq24174 Length=521 Score = 141 bits (156), Expect = 2e-31 Identities = 149/195 (76%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||||||| |||||||||||| ||| | ||||||| || |||| || | || | | Sbjct 389 CTTTAACGAACTATTCCGTCAGTTCGCGTCAGTGTCACTACTCCGTCACCGCATCGCAGT 330 Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCT 255 | | |||| |||||| ||||| || | ||||||| |||| ||||||| |||| Sbjct 329 TATAAAAAGTACTGGAATATTAACCAGTTGT-CCATCGGCTGCGCCTTTCGGCTTCACCT 271 Query 256 TATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGA 315 || | ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | Sbjct 270 TAGGCCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTATCCTTTCGGTGG 211 Query 316 GGGGGTTTCCCACCC 330 | ||||||| | ||| Sbjct 210 GCGGGTTTCTCGCCC 196 >seq6297 Length=2229 Score = 136 bits (150), Expect = 8e-30 Identities = 224/316 (71%), Gaps = 9/316 (3%) Strand=Plus/Minus Query 18 TTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACGTTC 77 ||||||| |||||| || ||||| ||||| ||||||| | | |||||||| | | Sbjct 860 TTAGCGGTTTTTCTTGGAAGTCTGATTACCTGCACTATCC-ACTCACCCGAAGGTT-TGC 803 Query 78 CATACTGTCAA-TCTCGACTCTTTCCGTGGATTTGCCTGCGGAAATCAACGT--CTACAC 134 |||| ||| | || | | | |||||||||| | ||| | | ||||| Sbjct 802 GGTACTATCAGCTTTCAGCATCAACGGCGGATTTGCCTACC---ATCGATATACCTACAG 746 Query 135 TCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCC 194 ||||||| |||||||||||| ||||| ||||||| || ||||||||| || | Sbjct 745 CCTTTAACGATCTATTCCGTCAGATCGCGGCAGTGTCACTACTCCGTCCCCACATCGCAG 686 Query 195 TCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACC 254 | | | |||| | |||| ||| | || | |||||| | || ||||| | || Sbjct 685 TTATAAAAAGTACGGTAATATTAAACCGTTGT-CCATCGAATTTCCCCTTCGGGTTCTCC 627 Query 255 TTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCG 314 ||| | ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | Sbjct 626 TTAGGTCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTATCCTTTCGGTG 567 Query 315 AGGGGGTTTCCCACCC 330 | ||||||| | ||| Sbjct 566 GGCGGGTTTCTCGCCC 551 >seq14940 Length=947 Score = 100 bits (110), Expect = 5e-19 Identities = 138/189 (73%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 128 TCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCAC 187 ||||||| ||||||| ||||||||| || |||| | ||||| | ||| || | Sbjct 411 TCTACACGCTTTAACGATCTATTCCGTAAGATCGCGGACCTTTCACTTCCTCGTTACCCC 352 Query 188 GTCACCCTCAAATGTAG-TAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCG 246 || | | | | || | |||||| ||||| | ||||||| | || || |||| Sbjct 351 ATCGAA-TAATAAGCAGGTGTTGGAATATTAACCAACT-TGCCATCAGCTTCCCCTTTCG 294 Query 247 GCTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTC 306 | | ||| | ||||||||| ||||||||||||||| || ||||||||||||||||| | Sbjct 293 GGTACGCCTAAGGACCCGACTAACCCTGATCCGATTAACGTTGATCAGGAAACCTTAGAC 234 Query 307 TTTCGGCGA 315 ||||||||| Sbjct 233 TTTCGGCGA 225 >seq17759 Length=779 Score = 86.0 bits (94), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 146 CTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCTCAAATGTAGT 205 |||||||||||| |||||| | ||| || |||| || | |||| | | ||||| Sbjct 449 CTATTCCGTCAGTTCGCGGCGCTTTCATCACTCCGTCACCCCATCACAGTAATTAGTAGT 508 Query 206 AACGGAATACTAACCGTTTCTGCCATCGG-TCTCGCCGTTCGGCTGAACCTTATGACCCG 264 | |||||| ||||| || ||||||| | || || ||||| | ||||| |||| | Sbjct 509 ACGGGAATATTAACCCGTTA-GCCATCGACTGTC-CCTTTCGGGTTCGCCTTAGGACCAG 566 Query 265 ACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTC 324 ||| |||| | | ||||||| | | |||||||||||| |||||| | | ||||||| Sbjct 567 ACTAACCCACAGCTGATTAGCATAGCTGTGGAAACCTTAGTTTTTCGGTGTGCGGGTTTC 626 Query 325 CCACCC 330 | ||| Sbjct 627 TCGCCC 632 >seq20727 Length=644 Score = 82.4 bits (90), Expect = 1e-13 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262 |||| |||||| ||||| || | ||||| | || ||||| | | ||| | || Sbjct 433 AGTATGGGAATATTAACCCATTGT-CCATCCACTACCCCTTTCGGGTTCGCGTTAGGTCC 491 Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322 ||||| ||||| | | ||||||| | | |||||||||||||||||||| ||||||||| Sbjct 492 CGACTAACCCTCAGCTGATTAGCATGGCTGAGGAAACCTTAGTCTTTCGGTGAGGGGGTT 551 Query 323 TCCCACCCCC 332 || | ||||| Sbjct 552 TCTCGCCCCC 561 >seq12131 Length=1185 Score = 82.4 bits (90), Expect = 1e-13 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262 |||| |||||| ||||| || | ||||| | || ||||| | | ||| | || Sbjct 1047 AGTATGGGAATATTAACCCATTGT-CCATCCACTACCCCTTTCGGGTTCGCGTTAGGTCC 989 Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322 ||||| ||||| | | ||||||| | | |||||||||||||||||||| ||||||||| Sbjct 988 CGACTAACCCTCAGCTGATTAGCATGGCTGAGGAAACCTTAGTCTTTCGGTGAGGGGGTT 929 Query 323 TCCCACCCCC 332 || | ||||| Sbjct 928 TCTCGCCCCC 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959658825600