Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq15772 280 2e-73 seq15329 271 1e-70 seq34654 255 9e-66 seq21545 205 1e-50 seq2775 145 1e-32 seq6457 98.7 1e-18 seq21710 91.5 2e-16 >seq15772 Length=893 Score = 280 bits (310), Expect = 2e-73 Identities = 202/229 (88%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 13 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 70 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 71 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 130 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||| || ||||| || | | ||||||||||||||||||| Sbjct 131 ACCCAGACCTTTCGGACAAGGAAATGAACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 190 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 239 >seq15329 Length=923 Score = 271 bits (300), Expect = 1e-70 Identities = 200/229 (87%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| | Sbjct 566 GTACAAAGGGCAGGGACGTAATCAGTGCGAG-TTGATGACTCGCGCTTACTAGGAATT-C 623 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||||||| || |||| |||| ||||||||||| |||||| ||||| ||| |||| Sbjct 624 CTCGTTGAAGATTAATAATTACAATAATCTATCCCCAGCACGATACAATTTGAAAAGATT 683 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| | |||||||| || |||| || || |||||||||||||||||||| Sbjct 684 ACCCAGGCCTCCCAGCCAAGGTTGTAAGCTCGATGCATGTATCAGTGTAGCGCGCGTGCG 743 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 744 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCGAACTTCC 792 >seq34654 Length=231 Score = 255 bits (282), Expect = 9e-66 Identities = 185/209 (89%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| | Sbjct 207 GTACAAAGGGCAGGGACGTAGTCAACACGAG-TTGATGACACGCGCTTACTAGGAATT-C 150 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||| |||| Sbjct 149 CTCGTTGAAGACCAATAATTGCAATGGTCTATCCCCATCACGATGCAATTTGAAAAGATT 90 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||| ||| | ||| || | ||||||| | |||||||||||||||||||| Sbjct 89 TCCCGATCCTCTCGAACCAGGAAGAAAAGCTCGTTGGCTGCATCAGTGTAGCGCGCGTGC 30 Query 179 GGCCCAGAACATCTAAGGGCATCACAGAC 207 ||||||||||||||||||||||||||||| Sbjct 29 GGCCCAGAACATCTAAGGGCATCACAGAC 1 >seq21545 Length=613 Score = 205 bits (226), Expect = 1e-50 Identities = 190/234 (81%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| ||||||| |||||||||||||| | Sbjct 296 GTACAAAGGGCAGGGACGTAATCAGCACAAGCT-GATGACTTATGCTTACTAGGAATT-C 353 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCA-AAGAT 118 || ||| |||| | | |||| ||| |||||||||| | ||||| | ||| | ||||| Sbjct 354 CTTGTTCAAGATCTATAATTCCAAAGATCTATCCCTAGCACGACACACATTATACAAGAT 413 Query 119 TACCCGGACCTGTCGGCCA-AGGTGATAGA---CTCGTTGAATACATCAGTGTAGCGCGC 174 |||||| ||| || | | ||| | | | || |||| ||| |||||||||||||| Sbjct 414 TACCCGAACCCTTCCGAGACAGGAAAAATAAAGCTTGTTGCATATGTCAGTGTAGCGCGC 473 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 474 GTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 527 >seq2775 Length=4502 Score = 145 bits (160), Expect = 1e-32 Identities = 160/204 (78%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| ||||||| |||||||||||||| | Sbjct 202 GTACAAAGGGCAGGGACGTAATCAGCACAAGCT-GATGACTTATGCTTACTAGGAATT-C 145 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCA-AAGAT 118 || ||| |||| | | |||| ||| |||||||||| | ||||| | ||| | ||||| Sbjct 144 CTTGTTCAAGATCTATAATTCCAAAGATCTATCCCTAGCACGACATACATTATACAAGAT 85 Query 119 TACCCGGAC-CTGTCGGCCAAGGT--GATAGA-CTCGTTGAATACATCAGTGTAGCGCGC 174 |||||| || || || ||| |||| | || |||| || |||||||||||||| Sbjct 84 TACCCGTACTCTTCCGAGTCAGGAAAGATAAAGCTTGTTGCATGTGTCAGTGTAGCGCGC 25 Query 175 GTGCGGCCCAGAACATCTAAGGGC 198 ||||||||||| |||||||||||| Sbjct 24 GTGCGGCCCAGGACATCTAAGGGC 1 >seq6457 Length=2181 Score = 98.7 bits (108), Expect = 1e-18 Identities = 170/242 (70%), Gaps = 20/242 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| |||| | | | |||||| | ||||||||||||||| | Sbjct 2167 GTACAAAAGGCAGGGACGTAATCAATGTG-GTATGATGAACCACGCTTACTAGGAATT-C 2110 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 |||||| | || | || |||| || ||||| ||| ||| || || |||| Sbjct 2109 CTCGTTCACGAGGATG--TTCCAATCCTCGATCCCTGTCATAACGGTGT--TTGAAAAGT 2054 Query 118 TTACCCGGACCTGTC-GGCCAAGGTGATAGA----------CTCGTTGAATACATCAGTG 166 || ||| ||| | || |||| | || | |||| || | | | || Sbjct 2053 TTTCCCAATCCTATTAGGATAAGGGGTTAAAAACCATAGCGCTCGCTGGTACCGTTATTG 1994 Query 167 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 ||| ||||||| |||||| ||||||||| |||||||||||||||||| |||| || ||| Sbjct 1993 TAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGACCTGTTATGGCCTAAATCTT 1934 Query 227 CC 228 || Sbjct 1933 CC 1932 >seq21710 Length=607 Score = 91.5 bits (100), Expect = 2e-16 Identities = 50/50 (100%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751741098385