Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq15772 176 3e-42 seq22622 158 7e-37 seq21710 158 7e-37 >seq15772 Length=893 Score = 176 bits (194), Expect = 3e-42 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||||||||||||||| || |||||||| ||||| || || Sbjct 541 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAACGGGTCAAAATACTAACACCGTCC 600 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 601 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 657 >seq22622 Length=574 Score = 158 bits (174), Expect = 7e-37 Identities = 106/117 (91%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| || ||||| | |||||| || || Sbjct 532 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGGGTCAAG-TAATAACACCGTCC 474 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 473 GATCCCTAGTCGGCATCGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 417 >seq21710 Length=607 Score = 158 bits (174), Expect = 7e-37 Identities = 106/117 (91%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| || ||||| | |||||| || || Sbjct 352 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGGGTCAAG-TAATAACACCGTCC 410 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 411 GATCCCTAGTCGGCATCGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278307243210