Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq22622 473 2e-131 seq15772 379 4e-103 seq28495 251 1e-64 seq21710 217 3e-54 seq10657 210 4e-52 >seq22622 Length=574 Score = 473 bits (524), Expect = 2e-131 Identities = 294/314 (94%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||| ||| |||||| Sbjct 103 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 162 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 163 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 222 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 TAGCATGGAATAATAAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 282 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 283 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 342 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 343 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 401 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 402 ACGAAAGTTAGGGG 415 >seq15772 Length=893 Score = 379 bits (420), Expect = 4e-103 Identities = 225/235 (96%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 84 AAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAAT 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 AAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAAT 834 Query 144 AGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGT 203 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 AGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGT 774 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 |||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 773 CGGGGGCATCAGTATTCAAGCGTCAGAGGTGAAATTCTTGGATTGCTTGAAGACTAACTA 714 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 713 CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 659 >seq28495 Length=397 Score = 251 bits (278), Expect = 1e-64 Identities = 223/275 (81%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 || |||| | ||| || | || || || | || |||||||||||||||||||||| || Sbjct 273 TGGCCTTAATTGGCTGGGTCGCGGCTCCGGCGCTGTTACTTTGAAAAAATTAGAGTGCTC 214 Query 100 AAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| || | ||||| ||||||||||||||||||||| |||||| || ||| || Sbjct 213 AAAGCAAGCTTATGCTCTGAATACATTAGCATGGAATAACGTGATAGGA-GTCTGGTCCT 155 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||| |||||| | |||||| ||||||||||||||||| |||||||| | |||| Sbjct 154 ATTGTGTTGGCCTTCGGGACCGGAGTAATGATTAATAGGGACTGTCGGGGGCATTCGTAT 95 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | ||||||||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct 94 TTCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGGACCACTGCGAAAGCATTTG 35 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||||||||||||||||||| ||||||||||| Sbjct 34 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 1 >seq21710 Length=607 Score = 217 bits (240), Expect = 3e-54 Identities = 133/140 (95%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 607 CGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAAT 548 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 547 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAAT 488 Query 299 CAGTGAACGAAAGTTAGGGG 318 ||| |||||||||||||||| Sbjct 487 CAG-GAACGAAAGTTAGGGG 469 >seq10657 Length=1350 Score = 210 bits (232), Expect = 4e-52 Identities = 179/217 (82%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||||||||||||||||| | |||||| ||||| | |||| ||||||||| Sbjct 214 TTTACTTTGAAAAAATTAGAGTGTTTCAGGCAGGCAATTGCTTGGATACTGTAGCATGGA 155 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAG-GACCGCCGTAATGATTA 192 ||||| ||||||||| | | |||||| |||||||||| | | | |||||||||| Sbjct 154 ATAATGGAATAGGACTTT--GACCTATTT-GTTGGTTTCTCGAGGTCAAAGTAATGATTA 98 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||||| ||| ||||| | ||||| ||||||||||||||||||||||||||||||| Sbjct 97 ATAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATTA 38 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTT 289 ||||| |||| ||||||||| || ||||||||||| Sbjct 37 AAGACGAACTTATGCGAAAGCATTTGCCAAGGATGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914874747072