Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2487 251 3e-64 seq2775 215 2e-53 seq8124 192 2e-46 seq21234 172 2e-40 seq28023 132 2e-28 seq26853 131 7e-28 seq32270 120 1e-24 seq11950 113 2e-22 seq7652 104 1e-19 >seq2487 Length=4953 Score = 251 bits (278), Expect = 3e-64 Identities = 258/340 (76%), Gaps = 38/340 (11%) Strand=Plus/Minus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||| | ||||| ||||| | || ||||||||| ||||||||||||||||||||||| Sbjct 3154 GGACGTTGGCGAAATGGAGCGATCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 3095 Query 441 TCTATGCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACGG-------- 491 | | ||| |||||| |||||| |||||| ||||| |||||||||||| || Sbjct 3094 TGTGTGCAAGTGTTAGGGTGTGGAAACCCCAGCGCGAAATGAAAGTGAAGGGCAGCGCAA 3035 Query 492 --------AGGTGGGAACCCGTGAGG---------------GTG-CACCATCGACCGATC 527 |||| |||| | || || ||| ||| ||||||||||| Sbjct 3034 GTTGTCTGAGGTAGGAAACGTTGTGGACTTCGGTCTGCGGCGTGGCACTATCGACCGATC 2975 Query 528 CTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 ||| ||||| || ||||||||| ||||| | |||||| ||||||||||||| Sbjct 2974 ATGAAC-CTTCGTGGTGAAAGATTTGAGTTTGAGCACATATGTTGGTACCCGAAAGATGG 2916 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| ||| Sbjct 2915 TGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTC 2856 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||||||||||||||||||| |||||||||||||||| Sbjct 2855 TGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 2816 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 3677 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 3618 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 3617 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 3558 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 3557 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 3518 >seq2775 Length=4502 Score = 215 bits (238), Expect = 2e-53 Identities = 224/294 (76%), Gaps = 15/294 (5%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||| || ||||||||| | | ||| || Sbjct 1648 CGACCCGTCTTGAAACACGGACCAAGGAGTCTATCACATATGCGAGTTTGCGAGTGCAAA 1707 Query 465 ACC-CGTGCGCGTAATGAAAGTGAACGGA-GGTGGGAACCCGTGAGGG------------ 510 | | | | || |||||||||| | | |||| || | |||| Sbjct 1708 AACTCATAGGCTTAATGAAAGTAAGTATAAGGTGCCAAGAGGAGAGGTACGCCGATCTTC 1767 Query 511 -TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 |||| |||||||||| | |||| | | || | || ||||||||||||| || | | Sbjct 1768 CTGCAGCATCGACCGACCATGATCTTCTGTGAAAGGTTCGAGTAAGAGCATAATTGGTAG 1827 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| Sbjct 1828 GACCCGAAAGATGGTGAACTATGCTTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAG 1887 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||| | ||| ||||||||||| |||||||| ||| |||||||||||| Sbjct 1888 GCCCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGAGTATAGGGGCGA 1941 Score = 149 bits (164), Expect = 3e-33 Identities = 135/168 (80%), Gaps = 8/168 (5%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| ||||||||||| |||||| ||||| ||||| |||| ||||||||| | Sbjct 1237 TTCTAAGAGTCGGGTTGTTTGGGATTGCAGCCCTAAACGGGAGATAAACTTCTTCTAAGG 1296 Query 94 CTAAATAT---TGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGC 150 |||||||| ||| || |||||||||| ||||||| |||| ||||| ||||||| Sbjct 1297 CTAAATATCTATGG---GAAACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGA 1353 Query 151 ACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||| |||||| ||||||| || |||||| ||||| |||||| Sbjct 1354 ACTTTGAAAAGAGGGTTAAAA--GACTTGAAATCGTTGAGGAGGAAGC 1399 >seq8124 Length=1774 Score = 192 bits (212), Expect = 2e-46 Identities = 148/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 508 GGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567 ||||||| | |||||||| | ||| | | || || || |||| ||||| | ||||| Sbjct 1726 GGGTGCATCGTCGACCGACCTTGAGCTTATGCGAAGGGTTCGAGTGCGAGCACACCTGTT 1667 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1666 GGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAACTCTGGTGG 1607 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||| | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 1606 AGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 1551 >seq21234 Length=624 Score = 172 bits (190), Expect = 2e-40 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| |||| |||| |||||||| | || || || Sbjct 422 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCTAATTGGGTGGTAAATTCCGTCCAAGGC 363 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 362 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 303 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||||||| || | |||||||| | ||||||||| Sbjct 302 TGAAAAGAGAGTTAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 258 >seq28023 Length=409 Score = 132 bits (146), Expect = 2e-28 Identities = 151/197 (77%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 195 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTTAACGGGCGAGTA 136 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 ||||||| | || || ||| ||| || ||||| ||| | | |||| |||||| || Sbjct 135 AACCCGTAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCG 79 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| |||||| |||| ||||||||||||| Sbjct 78 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 19 Query 581 TGGTGAACTATGCCTGA 597 ||||||||||||||||| Sbjct 18 TGGTGAACTATGCCTGA 2 >seq26853 Length=442 Score = 131 bits (144), Expect = 7e-28 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 |||||| ||| | ||||| ||||||||||| |||||||||||||||||| | ||||| Sbjct 292 TTGAGTTTGAGTGTGCCTGTTTGGACCCGAAAGGTGGTGAACTATGCCTGAACAAGGTGA 233 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 |||| | |||||| | ||||||||| | |||| | ||| ||||||||||| ||| | | Sbjct 232 AGCCCGGGGAAACCCAGGTGGAGGCCTGTAGCGATGCTGACGTGCAAATCGCTCGCAAGA 173 Query 667 TTTGGGTATAGGGGCGA 683 ||||||||| || |||| Sbjct 172 TTTGGGTATCGGAGCGA 156 >seq32270 Length=300 Score = 120 bits (132), Expect = 1e-24 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || ||||||||||| |||||||||||||||||| | || ||| |||||||| | Sbjct 126 GAGGCGCCGTCGACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCC 67 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| ||||||||||||| ||||||| | || ||||||||| Sbjct 66 GTCCAAGGCTAAATACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGA 7 Query 146 AAAG 149 |||| Sbjct 6 AAAG 3 >seq11950 Length=1204 Score = 113 bits (124), Expect = 2e-22 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| || || || Sbjct 117 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCTGTCCAAGGC 58 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 ||||||| ||| ||||||||||||| ||||||| | || ||||||||||||| Sbjct 57 TAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAG 3 >seq7652 Length=1875 Score = 104 bits (114), Expect = 1e-19 Identities = 107/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| |||| | | || | | ||||||||| || ||||||||||| | | || |||| Sbjct 1325 TGAGTTAGAGTAAATATGCTAGTACCCGAAAGGTGATGAACTATGCCCGGACTGGTTGAA 1384 Query 608 GCCAGAGGAAACTCTGGTGGAGG--CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||| |||| |||||||||| ||| | ||||| ||| ||||||||||| ||||| Sbjct 1385 GCCAGGAGAAATCCTGGTGGAGGACCTC-CCGCGGTGCTGACGTGCAAATCGCTCGTCCG 1443 Query 666 ATTTGGGTATAGGGGCGA 683 | |||||||||| |||| Sbjct 1444 AGCTGGGTATAGGAGCGA 1461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079237688450