Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq23150 214 2e-53 seq10295 122 9e-26 >seq23150 Length=555 Score = 214 bits (236), Expect = 2e-53 Identities = 164/193 (85%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||||||||||| ||||||||||||||||||||||||| |||||| | || | Sbjct 483 TTACCTGAAGCTTAGAGGCTTTTCTTGGAAGCATGGCATCAAGCACTTCATGTTCCGAG- 425 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTAC 120 || |||||||||||| || | ||||||| ||||||||||||||||||| ||||||||| Sbjct 424 GAACACTCGTCATCAGTTCTCAGCCTTAGCATCCCGGATTTACCTAAGACACCAGCCTAC 365 Query 121 CACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 ||||||||| |||||||||||||| |||| ||||||||||||||||| |||||||| Sbjct 364 GACCTTAAACACGGACAACCAACGCCGTGCTGCTCTAGCCTTCTCCGTCCCCCCATCGCA 305 Query 181 TTAACCAGAAGTA 193 ||| ||| ||| Sbjct 304 GTAAAAAGAGGTA 292 >seq10295 Length=1395 Score = 122 bits (134), Expect = 9e-26 Identities = 134/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64 ||||||||||| ||||||||||||||||||| ||||| |||||||| | | || Sbjct 828 CTGAAGCTTAGTGGCTTTTCTTGGAAGCATGGTATCAATCACTTCGTGTGCAAGTAGG-- 771 Query 65 ACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACC 124 ||||| |||| || | | ||||| |||||||| ||||| ||| ||||| | Sbjct 770 -CTCGTTATCACGTCTCAGTCTTAGCTCTCCGGATTTGCCTAAAGAACCAACCTACACGC 712 Query 125 TTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATT 182 || ||| ||||| ||||| || |||| |||| ||||||||||||| ||||||||| Sbjct 711 TTGAACCGGGACATCCAACACCCGGCTGACCTAACCTTCTCCGTCCCCACATCGCATT 654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518221523142