Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq27704 197 1e-48 seq14573 179 4e-43 seq14849 176 4e-42 seq13487 168 6e-40 seq34597 163 3e-38 seq14778 156 4e-36 seq29904 104 2e-20 seq7661 98.7 9e-19 seq18629 93.3 4e-17 seq35409 86.0 6e-15 seq6100 84.2 2e-14 seq28222 77.0 3e-12 >seq27704 Length=418 Score = 197 bits (218), Expect = 1e-48 Identities = 145/168 (86%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 13 ATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGATTG 72 |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| || Sbjct 171 ATGCCTAGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGAAAAGCTGCGGGGACTG 112 Query 73 GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGATATAT 132 ||||| || ||||||||| ||||||||||||||||||||||| ||||||| ||||||| Sbjct 111 GCACACACAGATTGATCCGCAGATATCCGAATGGGGCAACCCGCTATATTGAAGATATAG 52 Query 133 CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || | || |||| | ||| ||| | ||||||||||||||||||| Sbjct 51 CACACCGATAGG---TGGGCAAACCCGCTGAACTGAAACATCTAAGTA 7 >seq14573 Length=973 Score = 179 bits (198), Expect = 4e-43 Identities = 144/173 (83%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| Sbjct 393 GGGGGATGCCTAGGCTCTCAGAGGCGATGAAGGGCGTGATAAGCTGCGAAAAGCTACGGG 334 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || |||||| || | |||||||||||||| |||||||||||||||| ||| ||| ||| Sbjct 333 TATGGGCACACACCACTTGATCCGTAGATACCCGAATGGGGCAACCCACTATGTTGAAGA 274 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| | | || |||| | ||| ||| | ||||||||||||||||||| Sbjct 273 CATAGTACACCGATAGG---TGGGCAAACCCGCTGAACTGAAACATCTAAGTA 224 >seq14849 Length=952 Score = 176 bits (194), Expect = 4e-42 Identities = 140/168 (83%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 13 ATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGATTG 72 |||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||| Sbjct 562 ATGCCTAGGCTCTCAGAGGCGATGAAGGGCGTGATAAGCTGCGAAAAGCTGCGGGGACAA 621 Query 73 GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGATATAT 132 ||||| | ||||||||| ||||| ||||||||||||||||| ||||||| ||||||| Sbjct 622 GCACACATTGATTGATCCGCAGATACCCGAATGGGGCAACCCGCTATATTGAAGATATAG 681 Query 133 CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || | || |||| | ||| ||| | ||||||||||||||||||| Sbjct 682 CACACCGATAGG---TGGGCAAACCCGCTGAACTGAAACATCTAAGTA 726 >seq13487 Length=1059 Score = 168 bits (186), Expect = 6e-40 Identities = 146/180 (81%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||| |||||||||||||||| ||||||| ||||||||||||||||||||| ||| Sbjct 910 GGCACACGGGGGATGCCTAGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAG 851 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 || |||| ||| ||| ||| ||||||||||| |||| |||||||||||||||||| || Sbjct 850 CTTCGGGTATTTGCAAATAGGAATTGATCCGAAGATTTCCGAATGGGGCAACCCGGCATG 791 Query 121 TTGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| ||| || ||| | || | || ||| || ||||||||||||||||||| Sbjct 790 TTGAAGACATGTCACA----TA--TAATGAGCAAACCTGCCGAACTGAAACATCTAAGTA 737 >seq34597 Length=233 Score = 163 bits (180), Expect = 3e-38 Identities = 111/125 (89%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || ||||||||||||| || |||||||||||||||||| |||||||||||||||| ||| Sbjct 106 GGCGGATGCCTAGGCTTTCAGAGGCGAAGAAGGACGTGGTAAGCTGCGAAAAGCTCGGGG 165 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 |||||||||| |||||||||||| |||| ||||||||||||||||| ||| |||| ||| Sbjct 166 GATTGGCACACACGAATTGATCCCGAGATGTCCGAATGGGGCAACCCAATACATTGAAGA 225 Query 128 TATAT 132 | ||| Sbjct 226 TGTAT 230 >seq14778 Length=957 Score = 156 bits (172), Expect = 4e-36 Identities = 143/180 (79%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||| ||||| |||||||||| ||||||| ||||||||||||||||||||| ||| Sbjct 250 GGCACACGGGGGATGTCTAGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAG 309 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | |||||||| ||| || || ||||||||| ||| |||||||||||||||| | ||| Sbjct 310 CCACGGGGATCAGCAAATGTGACTTGATCCGTGGATTTCCGAATGGGGCAACCTAACATA 369 Query 121 TTGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || || ||| | || || || ||||||| | ||||||||||||||||||| Sbjct 370 CTGAAGGTATGTTGTA----TA----ATACGCGAACGCGCCGAACTGAAACATCTAAGTA 421 >seq29904 Length=361 Score = 104 bits (114), Expect = 2e-20 Identities = 108/140 (77%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 41 ACGTGATAAGCTGCGAAAAGCTACGGGGATTGGCACATACGAATTGATCCGTAGATATCC 100 |||||||||||||||||||||| |||||| |||||| || |||||||| || ||||| Sbjct 1 ACGTGATAAGCTGCGAAAAGCTGCGGGGACGGGCACACACCGGTTGATCCGCAGGTATCC 60 Query 101 GAATGGGGCAACCCGATATATTGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGG 160 |||||||||||||| | | || || | || | || |||| ||||||| | Sbjct 61 GAATGGGGCAACCCAGTGTGCTGAAGGCACATTA-CCCGATAGG----GGGCGAACCCGC 115 Query 161 GGAACTGAAACATCTAAGTA 180 ||||||||||||||||||| Sbjct 116 TGAACTGAAACATCTAAGTA 135 >seq7661 Length=1873 Score = 98.7 bits (108), Expect = 9e-19 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||||||||||||||||| |||||||||||| ||| Sbjct 436 GGTGGATGCCTTGGCATGCACAGGCGAAGAAGGACGTGATACGCTGCGAAAAGCCGTGGG 495 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || ||| | ||||||| | ||| ||||||||||||||||| Sbjct 496 GAGCTGCGAATAAGCTTTGATCCATGGATCTCCGAATGGGGCAACCC 542 >seq18629 Length=738 Score = 93.3 bits (102), Expect = 4e-17 Identities = 86/108 (80%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||| ||||||||| |||||| ||||| |||| Sbjct 364 GGTGGATGCCTTGGCGATTACAGGCGACGAAAGACGTGATAGCCTGCGATAAGCTTCGGG 423 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || ||||| || | |||||||| |||| ||||||||||| ||||| Sbjct 424 GAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCC 471 >seq35409 Length=1007 Score = 86.0 bits (94), Expect = 6e-15 Identities = 137/195 (70%), Gaps = 20/195 (10%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||||||| | |||||||| ||| ||||| | |||||| |||| Sbjct 256 GCACACGGTGGATGCCTAGGCAGTTGGAGGCGATGAAAGACGTAGGAGCCTGCGATAAGC 197 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC----GA 116 | ||||| ||||| | | | |||||| |||| || |||||||| ||||| Sbjct 196 TCGGGGGAGCTGGCAAACAAGCTGTGATCCCGAGATCTCTGAATGGGGGAACCCACCTAC 137 Query 117 TATATTGGAGATAT----------AT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAAC 165 | ||||| || ||| || |||| | || | | |||||| ||||||| Sbjct 136 TTTATTGTAGGTATCGTACAGTGAATACATAGCTGTACG----AAGCGAACCCGGGGAAC 81 Query 166 TGAAACATCTAAGTA 180 ||||||||||||||| Sbjct 80 TGAAACATCTAAGTA 66 >seq6100 Length=2287 Score = 84.2 bits (92), Expect = 2e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| ||||||||||||| ||| | ||| ||| |||||||| | |||||||||||||| Sbjct 1952 GGCATACGGTGGATGCCTTGGCGCCAAGAGCCGATGAAGGACGCGGTAAGCTGCGAAAAG 1893 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | ||||| ||| | | ||||||| | || ||||||||||| ||||| Sbjct 1892 TCATGGGGAGCCGCAAGCAGGCTTTGATCCATGAATCTCCGAATGGGGAAACCC 1839 >seq28222 Length=404 Score = 77.0 bits (84), Expect = 3e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| |||||||||| | ||||||| ||| | ||| Sbjct 177 GGTGGATGCCTTGGCACTGAGAGGCGATGAAGGACGTGGCACGCTGCGATAAGTCATGGG 118 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || | | ||||||||| || ||||||||||| ||||| Sbjct 117 GAGCTGCGAGCAAGCTTTGATCCGTGAATTTCCGAATGGGGAAACCC 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476635845359