Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq17302 376 6e-102 seq33584 279 1e-72 seq33948 273 6e-71 seq14004 262 1e-67 seq19869 260 4e-67 seq23303 224 3e-56 seq29677 188 2e-45 seq25714 141 2e-31 seq3326 104 6e-20 seq598 78.8 2e-12 >seq17302 Length=804 Score = 376 bits (416), Expect = 6e-102 Identities = 327/403 (81%), Gaps = 5/403 (1%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| |||| |||||||||| |||||||||||||||||||||||| |||| || |||||| Sbjct 87 AGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTT 146 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||||||||||||||||| | ||| |||||| | ||| |||| |||||| || Sbjct 147 GTTCGGAATTACTGGGCGTAAAGGGCGCGTAGGCGGCTTATCAAGTCAGGCGTGAAAGCC 206 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 |||||||||||||||||| ||| ||| ||||| | ||||||| ||||| ||| Sbjct 207 CCGGGCTTAACCTGGGAACTGCGCTTGAGACTGGTAGGCTAGAGTACCGGAGAGGTAGGT 266 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||||| |||||| ||||||| ||||||||| ||| |||||||| |||||||||| Sbjct 267 GGAATTCCCAGTGTAGAGGTGAAATTCGTAGATATTGGGAAGAACACCAGTGGCGAAGGC 326 Query 250 AGCCCCCTGG--GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||| |||| | || ||||||||| | || ||||||||||||||||||||||||||| Sbjct 327 GGCCTACTGGACGGTA--ACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTA 384 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGAT-TTACTTCCT 366 |||||||||||||||||||| |||||||| || |||| ||||||| | ||| | | Sbjct 385 GATACCCTGGTAGTCCACGCTGTAAACGATGTCGGCTAGACGTTGGGGTTCTTAGAACTT 444 Query 367 TGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| || ||||||||| | ||| ||||||||||||| ||| Sbjct 445 CGGTGTCGCAGCTAACGCATTAAGCCGACCGCCTGGGGAGTAC 487 >seq33584 Length=265 Score = 279 bits (308), Expect = 1e-72 Identities = 223/266 (84%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 49 AATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTG 108 |||||| ||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 265 AATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGTAGGTGGTTT 206 Query 109 TGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTG-CACGA 167 |||| || ||||||||||||||||| |||||||| | |||| || |||| || | Sbjct 205 GTTAAGCTAGCTGTGAAATCCCCGGGCTCAACCTGGGCACTGCAGTTAGAACTGGCAAG- 147 Query 168 CTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTG 227 ||||||| | ||||||| ||||||||||| ||||||| ||||||||||||||||| || Sbjct 146 CTAGAGTAGGGTAGAGGGGTGTGGAATTCCAGGTGTAGCGGTGAAATGCGTAGATATCTG 87 Query 228 GAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGC 287 |||||||| || |||||||||| | |||||| | | |||||| || | | ||||||| Sbjct 86 GAGGAACATCAGTGGCGAAGGCGACACCCTGGACTCATACTGACACTGAGGTGCGAAAGC 27 Query 288 GTGGGGAGCAAACAGGATTAGATACC 313 |||||||||||||||||||||||||| Sbjct 26 GTGGGGAGCAAACAGGATTAGATACC 1 >seq33948 Length=254 Score = 273 bits (302), Expect = 6e-71 Identities = 213/254 (84%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 57 GGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGAC 116 |||||||||||||| ||||||||||||||||||||||||||| ||| ||| || |||| | Sbjct 254 GGGTGCAAGCGTTACTCGGAATTACTGGGCGTAAAGCGTGCGTAGGTGGTGGTTTAAGTC 195 Query 117 AGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGT 176 | ||||||| ||| ||||| ||||||||||||||| | | |||| | |||||||||| Sbjct 194 TGCTGTGAAAGCCCTGGGCTCAACCTGGGAATTGCAGTGGATACTGGATCACTAGAGTGT 135 Query 177 GTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACAC 236 | |||||| | |||||| | |||||||||||||||||||||| || | ||||||| Sbjct 134 GGTAGAGGGATGCGGAATTTCTGGTGTAGCAGTGAAATGCGTAGAGATCAGAAGGAACAT 75 Query 237 CAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGC 296 | |||||||||| || |||||| ||||||||| || | ||||||||||||||||||| Sbjct 74 CCGTGGCGAAGGCGGCATCCTGGGCCAACACTGACACTGAGGCACGAAAGCGTGGGGAGC 15 Query 297 AAACAGGATTAGAT 310 |||||||||||||| Sbjct 14 AAACAGGATTAGAT 1 >seq14004 Length=1018 Score = 262 bits (290), Expect = 1e-67 Identities = 305/408 (75%), Gaps = 5/408 (1%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 |||||||||| | ||||||||| |||||||||||||||||||||||| ||| | |||||| Sbjct 434 GAAGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCAAGCG 493 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGT-AAGACAGGTGTGAAA 126 ||| |||| ||| |||| ||||| ||||| ||||||| ||| ||| |||| |||||| Sbjct 494 TTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCTGTTAAGTCAGGAGTGAAA 553 Query 127 TCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGG 186 | ||| ||| | | ||| ||| |||| | ||| || || ||| | Sbjct 554 GACGGCAGCTCAACTATCGCAGTGCCCTTGATACTGAAGAACTTGAATGCACTAGAAGAA 613 Query 187 GGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAA 246 || ||||| || ||||| ||||||||| ||||||||| ||||||| || ||||| Sbjct 614 GGCGGAATGAGACAAGTAGCGGTGAAATGCATAGATATGTCTCAGAACACCGATTGCGAA 673 Query 247 GGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATT 306 |||||| || | | | ||||||| | ||||||||||||||||| ||||||||||| Sbjct 674 GGCAGCTTACTATGGTCTTATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATT 733 Query 307 AGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC-TTCC 365 ||||||||||||||||||||||||||||||| ||| | |||||| ||| || || Sbjct 734 AGATACCCTGGTAGTCCACGCCCTAAACGATGAACACTCGCTGTTGGCGATACACAGTCA 793 Query 366 TTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATACTCCC 413 || | ||| || |||| |||| || |||||||| ||| ||| Sbjct 794 GCGG---CTAAGCGAAAGCGTTAAGTGTTCCACCTGGGGAGTACGCCC 838 >seq19869 Length=681 Score = 260 bits (288), Expect = 4e-67 Identities = 267/349 (77%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 9 AAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGT 68 ||||||||||| ||||||||| |||||||||||||||||||| ||| ||| ||||||||| Sbjct 580 AAGAATAAGCATCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGATGCAAGCGT 521 Query 69 TAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATC 128 || |||| | | |||| ||||| ||||| |||||| |||||| ||| |||||||| Sbjct 520 TATCCGGATTCATTGGGTTTAAAGGGTGCGTAGGCGGACTTGTAAGTCAGTGGTGAAATC 461 Query 129 CCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGG 188 | ||||||| | || ||| ||| |||||| | ||||||| | || | || Sbjct 460 TCTCAGCTTAACTGAGAAACTGCCATTGATACTGCAGGTCTAGAGTATAGATGACGTTGG 401 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 ||||| || ||||| ||||||| | ||||||||| ||||||| || ||||||| Sbjct 400 CGGAATATGACATGTAGTGGTGAAATACTTAGATATGTCATAGAACACCGATTGCGAAGG 341 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 |||| | || ||||||||| | ||||||||| | ||||| ||||||||||||| Sbjct 340 CAGCTAACGAAACTATAACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAGGATTAG 281 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGAT 357 ||||||||||||||| | || |||||||| ||| |||||||| ||| Sbjct 280 ATACCCTGGTAGTCCGCACCGTAAACGATGATTACTCGTTGTTGGCGAT 232 >seq23303 Length=550 Score = 224 bits (248), Expect = 3e-56 Identities = 222/287 (77%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 51 TACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTG 110 |||| ||||||||||||||| |||| |||||||| ||||| | |||||||||| Sbjct 550 TACGGAGGGTGCAAGCGTTATCCGGATTTACTGGGTTTAAAGGGAGCGCAGGCGGGCTGA 491 Query 111 TAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTA 170 |||| ||| |||||||||||| ||||||| |||||| ||| ||| ||| | || Sbjct 490 TAAGTCAGTGGTGAAATCCCCGAGCTTAACTTGGGAACTGCCATTGATACTATTGGTCTT 431 Query 171 GAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAG 230 || ||| |||| | ||||| | |||||| ||||||||| |||||||| Sbjct 430 GAATGTTGTGGAGGTAAGCGGAATATGTCATGTAGCGGTGAAATGCATAGATATGACATA 371 Query 231 GAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTG 290 ||||||| || ||||||||||| || | || | ||||||| | || |||||||||| Sbjct 370 GAACACCTATTGCGAAGGCAGCTTACTACGCAAATATTGACGCTGAGGCTCGAAAGCGTG 311 Query 291 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 310 GGGATCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 264 >seq29677 Length=366 Score = 188 bits (208), Expect = 2e-45 Identities = 254/352 (72%), Gaps = 10/352 (3%) Strand=Plus/Plus Query 66 CGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAA 125 ||||| |||| ||| |||| ||||| ||||| |||||| | | |||| |||| ||||| Sbjct 1 CGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCTCTTTAAGTCAGGAGTGAA 60 Query 126 ATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGG 185 | | ||| ||| | | ||| |||| |||| | || || | || | Sbjct 61 AGACGGCAGCTCAACTGTCGCAGTGCCTTTGATACTGAAGAGCTTGAATACACTTGAAGT 120 Query 186 GGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGA 245 || ||||| || ||||| ||||||||| ||||||||| |||||||||| |||| Sbjct 121 AGGCGGAATGAGACAAGTAGCGGTGAAATGCATAGATATGTCACAGAACACCAATTGCGA 180 Query 246 AGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGAT 305 ||||||| || | | | ||||||| | ||||||||||||||||| |||||||||| Sbjct 181 AGGCAGCTTACTAAAGTGAGATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGAT 240 Query 306 TAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCC 365 |||||||||||||||||||||||||||||||| ||| | |||||| ||| ||| Sbjct 241 TAGATACCCTGGTAGTCCACGCCCTAAACGATGAACACTCGATGTTGGCGATATAC---- 296 Query 366 TTGGT-AACGT---AGCTAACGCGTGAAGTTGACCGCCTGGGGAATACTCCC 413 ||| | ||| ||| || |||| |||| || |||||||| ||| ||| Sbjct 297 --GGTCAGCGTCTAAGCGAAAGCGTTAAGTGTTCCACCTGGGGAGTACGCCC 346 >seq25714 Length=474 Score = 141 bits (156), Expect = 2e-31 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| ||||| ||| ||||||||| |||||||||||||||||||||||| ||| | Sbjct 154 TACCGGAAGAGGAAGGGACGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGTCCC 95 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||| ||||||||||||| | ||| |||||| ||||| ||| ||| Sbjct 94 GAGCGTTGTTCGGAATCACTGGGCGTAAAGGGAGCGTAGGCGGCGTGGTAAGTCAGATGT 35 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCAT 153 |||||||| ||||| |||| |||| ||||| Sbjct 34 GAAATCCCGGGGCTCAACCCCGGAACTGCAT 4 >seq3326 Length=3886 Score = 104 bits (114), Expect = 6e-20 Identities = 232/344 (67%), Gaps = 16/344 (5%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 2397 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 2455 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT 120 || ||| ||| ||||||| | | ||||||||| || | ||| |||| |||| Sbjct 2456 GCGAGCATTATTCGGAATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTATTAAG------ 2509 Query 121 GTGAAATCCCCGGGCTTAACCTGGGAAT--TGCATTTGT----GACTGCACGACTAGAGT 174 ||||| | | || || | | ||||| | |||| ||| |||| Sbjct 2510 TTGAAAAAAACAAATTAAAGCTCAACTTTATACATTTTTTCAAAACTGATAAACTTGAGT 2569 Query 175 GT-GTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | ||||| ||||||| | || || | |||| ||| |||| | ||||| Sbjct 2570 ATAAATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAA 2629 Query 234 CACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGG 293 ||||| |||||||||| ||||| | |||||| || | |||||||| |||| Sbjct 2630 GACCAAAGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGT 2689 Query 294 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||| |||||||| |||| ||||||||| || |||||||| Sbjct 2690 AGCGAACGGGATTAGAGACCCCGGTAGTCCATGCTGTAAACGAT 2733 >seq598 Length=13668 Score = 78.8 bits (86), Expect = 2e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 7 TGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGC 66 || |||| ||||||||| ||||| |||||||||||||||| ||||| |||||| ||| Sbjct 12731 TGGAGAAAAAGCACCGGTTAACTTAGTGCCAGCAGCCGCGGAAATACTGAGGGTGTTAGC 12672 Query 67 GTTAATCGGAATTACTGGGCGTAAAG 92 |||| | | ||| |||||| |||| Sbjct 12671 GTTATACTTATTTATTGGGCGCAAAG 12646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289141689056