Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq6100 176 6e-42 seq10295 156 6e-36 seq19173 145 1e-32 seq19422 143 4e-32 seq9360 136 5e-30 seq18625 134 2e-29 seq17759 131 2e-28 seq6297 129 8e-28 seq20727 122 1e-25 seq22240 102 1e-19 seq14940 95.1 2e-17 seq1161 95.1 2e-17 >seq6100 Length=2287 Score = 176 bits (194), Expect = 6e-42 Identities = 192/254 (76%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| | ||||| || ||| | | || ||| Sbjct 79 CTTAACCTTCCAGCACCGGGCAGGTGTCAGCACCTATACGTCAGCTTTCGCT-TTAGCAG 137 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||| | |||||||||||||| ||| | |||||| || || |||||| Sbjct 138 GCACCTGTGTTTGTGGTAAACAGTCGCTTGGGCCTAGTTTCTGCGGCCCCCCATAGCTCA 197 Query 121 ACACGTCGT------TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 ||| ||||| || ||| ||||||||||||||||||||||| |||||| Sbjct 198 GATCGTTTCAAATCATCACCTAAAGGGGCTCCCCTTCTCCCGAAGTTACGGGGACATTTT 257 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||||| ||||||||| | ||| |||| | |||||| ||||||| || | | |||||| Sbjct 258 GCCGAGTTCCTTAACGAGGGTTTTCCCGCGCACCTTAGGATTCTCTCCCCGCCTACCTGT 317 Query 235 GTCGGTTTACGGTA 248 |||||||| ||||| Sbjct 318 GTCGGTTTGCGGTA 331 >seq10295 Length=1395 Score = 156 bits (172), Expect = 6e-36 Identities = 188/249 (76%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 1088 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 1030 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCA-GCTC----AA 121 ||||||||| ||||||||||| || || ||| |||| ||| ||| || ||| | Sbjct 1029 GTGTTTTTATTAAACAGTCGCAGCCACCTTTTCACTGCAACC-CCATCACGCTTCGTGAG 971 Query 122 CACGTCGTT-CACCAG-CAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || ||| | ||| | | ||| | ||||||||||||||||||| || | |||||||| Sbjct 970 CAAGTCACTACACGTTACCGGGGCGCACCTTCTCCCGAAGTTACGGTGCTAATTTGCCGA 911 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| || |||| | | | |||||||| |||||| |||| ||||||||||||| Sbjct 910 GTTCCTTCTCCCGGGTTCTCTCAAGCGCCTTAGAATTCTCATCCTGCCCACCTGTGTCGG 851 Query 240 TTTACGGTA 248 ||| ||||| Sbjct 850 TTTGCGGTA 842 >seq19173 Length=713 Score = 145 bits (160), Expect = 1e-32 Identities = 183/249 (73%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACC-GTCTTCGCAC 60 ||| |||||| ||||||||||||||||| || ||||| ||| ||| | ||||||| Sbjct 361 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGTGTGGCTTCGCAG 302 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||||| ||| || | | || || || || Sbjct 301 AGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTTTGTGT--CCCCCGCC------ 250 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| |||| | || | | ||| ||||||||||||| | | |||||||| Sbjct 249 ---CCTGGTTGCCCAGAAACGGGGCTCGCTTATCCCGAAGTTACGCGAGTAATTTGCCGA 193 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | ||| |||| | | | |||||| |||| ||||||||| ||||||||||||| Sbjct 192 GTTCCTTCAACACCGTTCTCTCAAGCGCCTTGGTATACTCTACCTGTCCACCTGTGTCGG 133 Query 240 TTTACGGTA 248 ||| |||| Sbjct 132 TTTCGGGTA 124 >seq19422 Length=701 Score = 143 bits (158), Expect = 4e-32 Identities = 180/248 (73%), Gaps = 18/248 (7%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || |||| | || || ||| Sbjct 2 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACGTCAACTTTC-GTTTTGGCAG 60 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| | | ||||||||| || | Sbjct 61 AGCCCTGTGTTTTTGCTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCTC---------- 110 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || ||| | ||| ||||||||||||||||||| ||| | |||||||| Sbjct 111 -----TCTTTG--CAGAGGAGGCTCCCCTTCTCCCGAAGTTACAGGGTTAATTTGCCGAG 163 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| || ||||| ||| | |||||| || ||| | ||| |||||||||||| Sbjct 164 TTCCTTAGCCGTGATTCACTCGAGCACCTTAGAATATTCTTCTCGACTACCTGTGTCGGT 223 Query 241 TTACGGTA 248 |||||||| Sbjct 224 TTACGGTA 231 >seq9360 Length=1536 Score = 136 bits (150), Expect = 5e-30 Identities = 179/247 (72%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||| ||||||||||||||||| || ||||| ||| || | | ||||||| Sbjct 1473 TTAACCTTCAGGCACCGGGCAGGCGTCAGACCCTATACGTCGCATTGCTG-CTTCGCAGA 1415 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||||||| ||| || | ||| || | |||| Sbjct 1414 GCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCTTGTGCCACTCAGTCTAGCT--- 1358 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | | || | | ||| | || | ||||||||||| | || |||||||| | Sbjct 1357 -------TGCGCTAGGTGAGTCACGC-TTATTCCGAAGTTACGCGTGCAATTTGCCGAGT 1306 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | || ||||| | | | |||||| |||| ||||||||||||||||||||||||| Sbjct 1305 TCCTTCAGCATAGTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGTGTCGGTT 1246 Query 242 TACGGTA 248 | |||| Sbjct 1245 TCGGGTA 1239 >seq18625 Length=738 Score = 134 bits (148), Expect = 2e-29 Identities = 170/234 (73%), Gaps = 20/234 (9%) Strand=Plus/Plus Query 15 ACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTT 74 |||||||||| ||||| || ||||| || ||| | | |||||| | | | ||||||| Sbjct 1 ACCGGGCAGGTGTCAGGCCTTATACTTCATCTTTCGAT-TTCGCAAAGCCATATGTTTTT 59 Query 75 AGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACC 134 ||||||||||| | || ||| ||||| | |||| | | Sbjct 60 GCTAAACAGTCGCCTGGGCCTTTTCACTGCGGCT-------GCTC----------TTGCG 102 Query 135 AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAG 194 ||| || ||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 103 AGCCA--GCGCCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAGTTCCTTAGCCATGA 160 Query 195 TTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||| ||| | |||||| ||||||| | |||||||||||||||||||||||| Sbjct 161 TTCACTCGAGCACCTTAGGATTCTCTCCTCGACCACCTGTGTCGGTTTACGGTA 214 >seq17759 Length=779 Score = 131 bits (144), Expect = 2e-28 Identities = 176/248 (71%), Gaps = 23/248 (9%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || ||||| | || ||| Sbjct 77 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATCTTACGATTTT-GCAG 135 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| | || ||| ||||| ||| | Sbjct 136 AGCCCTGTGTTTTTGATAAACAGTCGCCTGGACCTCTTCACTGCGGCCAGCC-------- 187 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| | |||| || ||||||||||||||| || | |||||||| || Sbjct 188 --------TTCGC------TGGCGACCTTTCTCCCGAAGTTACAGGTCTATTTTGCCTAA 233 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| ||| || | ||| | |||||| ||||||| | || |||||||||||| Sbjct 234 TTCCTTAGCCATGAATCTCTCGAGCACCTTAGGATTCTCTCCTCAACTACCTGTGTCGGT 293 Query 241 TTACGGTA 248 |||||||| Sbjct 294 TTACGGTA 301 >seq6297 Length=2229 Score = 129 bits (142), Expect = 8e-28 Identities = 178/248 (72%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||| ||||| || ||||| || ||| | | || ||| Sbjct 1108 CTTAACCTTCCGGCACCGGGCAGGTGTCAGGCCTTATACGTCATCTTGCGATTTT-GCAA 1050 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| ||||||||||| | || ||| ||||| ||| | Sbjct 1049 AGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCTTTTCACTGCG----------GCTGA 1000 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | | ||||| ||||||||||||||||||| ||||||||||||||| Sbjct 999 ---CATTGCTG-CCAGCG------CCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAG 950 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| ||| ||||| ||| | |||||| || |||| || | |||||||||||| Sbjct 949 TTCCTTAGCCATGATTCACTCGAGCACCTTAGAATCCTCTTCCCGGATACCTGTGTCGGT 890 Query 241 TTACGGTA 248 || ||||| Sbjct 889 TTGCGGTA 882 >seq20727 Length=644 Score = 122 bits (134), Expect = 1e-25 Identities = 172/242 (71%), Gaps = 21/242 (9%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || |||||| | ||| | | || ||| Sbjct 80 CTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTATACAGCATCTTTCGAT-TTAGCAG 138 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| | || ||| ||||| ||| || ||| Sbjct 139 AGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTCTTCACTGCGGCCAGCATT-GCT-- 195 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || |||| | ||||| ||||||||||| | | |||||||| | Sbjct 196 ---------------GC--TGGCGTCTCTTCTTCCGAAGTTACGAGACTATTTTGCCTAG 238 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| |||| |||| ||| | |||||| ||||||| | ||| |||||||||||| Sbjct 239 TTCCTTAGCCACGACTCACTCGAGCACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGT 298 Query 241 TT 242 || Sbjct 299 TT 300 >seq22240 Length=588 Score = 102 bits (112), Expect = 1e-19 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 148 CTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGC 207 ||| ||||||||||||| | || |||||||| |||||| | || ||||| | | | ||| Sbjct 81 CTTATCCCGAAGTTACGCGTGCAATTTGCCGAGTTCCTTCAACATAGTTCTCTCAAGCGC 140 Query 208 CTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| |||| ||||||||| |||||||||||||||| |||| Sbjct 141 CTTGGTATACTCTACCTGCCCACCTGTGTCGGTTTCGGGTA 181 >seq14940 Length=947 Score = 95.1 bits (104), Expect = 2e-17 Identities = 167/248 (67%), Gaps = 23/248 (9%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| |||| | ||||| || ||| | | || ||| Sbjct 763 CTTAACCTTCCAGCACCGGGCAGGTATCAGGCTCTATACTTCATCTTTCGATTTT-GCAG 705 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 || ||||||||||| |||||||| | || | | || ||| |||| | | Sbjct 704 GGCCCTGTGTTTTTGTTAAACAGTTGGTTGCACCATTTTACTGTGACCGCATC------- 652 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | || || | || |||||||||||| | | || |||||| | Sbjct 651 ---------------GCTGCGGTACGCTTTATCCCGAAGTTACAGCGTCAATTTGCCTAG 607 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| || | | |||||||| |||||||| || ||| | | | ||||||||||| Sbjct 606 TTCCTTCTCCGCGGCTCACCCGAGCGCCTTAGAATACTCATCTCGTCTACCTGTGTCGGA 547 Query 241 TTACGGTA 248 |||||||| Sbjct 546 TTACGGTA 539 >seq1161 Length=8540 Score = 95.1 bits (104), Expect = 2e-17 Identities = 167/243 (69%), Gaps = 18/243 (7%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 6893 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 6835 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || || || | Sbjct 6834 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTG---------ACACCTAA------ 6790 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 6789 -TTTTAAAAAAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 6731 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | | ||| | | | ||||||| | ||| |||| |||||||||||||||| | Sbjct 6730 TCAATATAATTCTCTCATCCACCTTAGTCTACTCGACCTATTCACCTGTGTCGGTTTAGG 6671 Query 246 GTA 248 ||| Sbjct 6670 GTA 6668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694160929147