Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq19422 181 1e-43 seq6297 147 2e-33 seq17759 131 2e-28 seq18625 129 6e-28 seq14940 127 2e-27 seq20727 111 2e-22 seq22240 80.6 3e-13 seq9360 80.6 3e-13 seq10295 77.0 3e-12 seq6100 75.2 1e-11 >seq19422 Length=701 Score = 181 bits (200), Expect = 1e-43 Identities = 145/175 (83%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | |||||| |||||| ||| ||||||||||||| || Sbjct 228 CGTAAACCGACACAGGTAGTCGAGAAGAATATTCTAAGGTGCTCGAGTGAATCACGGCTA 169 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| | ||||||||||||||||| || ||| ||| | | | || | || Sbjct 168 AGGAACTCGGCAAATTAACCCTGTAACTTCGGGAGAAGGGGAGCCTCCTCTGCAAAGAGA 109 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct 108 GGCCGCAGAGAAATGGCCCAGGCGACTGTTTAGCAAAAACACAGGGCTCTGCCAA 54 >seq6297 Length=2229 Score = 147 bits (162), Expect = 2e-33 Identities = 140/175 (80%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| ||| |||| || || |||||| ||| |||||||||| || || Sbjct 885 CGCAAACCGACACAGGTATCCGGGAAGAGGATTCTAAGGTGCTCGAGTGAATCATGGCTA 944 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| || |||||||||||||||| ||||| | || ||| |||| | Sbjct 945 AGGAACTCGGCAAAATGGCCCTGTAACTTCGGGA-GAAGGGGCGCT-GGCAGCAATGTCA 1002 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||| ||| |||||| ||||||||||||||||||| |||| ||| || Sbjct 1003 -GCCGCAGTGAAAAGGCCCAGGCGACTGTTTAACAAAAACACATGGCTTTGCAAA 1056 >seq17759 Length=779 Score = 131 bits (144), Expect = 2e-28 Identities = 134/175 (77%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||| | | || || |||||| ||| ||| || ||| || || Sbjct 298 CGTAAACCGACACAGGTAGTTGAGGAGAGAATCCTAAGGTGCTCGAGAGATTCATGGCTA 239 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||| |||||||| | ||||||||||||||| ||||| | |||| | || Sbjct 238 AGGAATTAGGCAAAATAGACCTGTAACTTCGGGAGAAAGG-----TCGCCAGCGAAGGCT 184 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||| |||||||||| |||||||| ||||||||||||||| ||| || Sbjct 183 GGCCGCAGTGAAGAGGTCCAGGCGACTGTTTATCAAAAACACAGGGCTCTGCAAA 129 >seq18625 Length=738 Score = 129 bits (142), Expect = 6e-28 Identities = 135/175 (77%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| || |||| | || || |||||| ||| |||||||||| || || Sbjct 211 CGTAAACCGACACAGGTGGTCGAGGAGAGAATCCTAAGGTGCTCGAGTGAATCATGGCTA 152 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| || |||||||||||||||| ||||| | || | | || | | Sbjct 151 AGGAACTCGGCAAAATGGCCCTGTAACTTCGGGA-GAAGGGGCGCTGGCTCGCAA-GAGC 94 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||| ||| |||||| |||||||| |||||||| | |||| ||| || Sbjct 93 AGCCGCAGTGAAAAGGCCCAGGCGACTGTTTAGCAAAAACATATGGCTTTGCGAA 39 >seq14940 Length=947 Score = 127 bits (140), Expect = 2e-27 Identities = 134/175 (77%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || || | |||||| |||| || | ||| ||| |||||||||| | |||| | ||| | Sbjct 542 CGTAATCCGACACAGGTAGACGAGATGAGTATTCTAAGGCGCTCGGGTGAGCCGCGGAGA 601 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| |||| ||||||||||||||||||| || | | ||| || | Sbjct 602 AGGAACTAGGCAAATTGACGCTGTAACTTCGGGATAAAGCGTAC---CGCAGCGAT--GC 656 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || | ||| || ||| || ||||||||||||||||||||||||| ||| || Sbjct 657 GGTCACAGTAAAATGGTGCAACCAACTGTTTAACAAAAACACAGGGCCCTGCAAA 711 >seq20727 Length=644 Score = 111 bits (122), Expect = 2e-22 Identities = 130/172 (76%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| ||||||| | || || |||||| ||| |||||| || || ||||| Sbjct 300 AAACCGACACAGGTAGTCGAGGAGAGAATCCTAAGGTGCTCGAGTGAGTCGTGGCTAAGG 241 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGG 144 ||||||||||| | | |||||||| ||| ||| | | | | ||| ||| | || Sbjct 240 AACTAGGCAAAATAGTCTCGTAACTTC-GGAAGAAGAGACGCCA-GCAGCAAT-GCTGGC 184 Query 145 CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||| ||| ||| |||||| |||||||| |||||||||||| || ||| || Sbjct 183 CGCAGTGAAGAGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCTAA 132 >seq22240 Length=588 Score = 80.6 bits (88), Expect = 3e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 175 AAACCGACACAGGTGGGCAGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 116 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||| |||||| || | ||||||||||||||| Sbjct 115 AACTCGGCAAATTGCACGCGTAACTTCGGGATAA 82 >seq9360 Length=1536 Score = 80.6 bits (88), Expect = 3e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || ||| ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 1245 AAACCGACACAGGTGGTCAGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGCTGAAGG 1304 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||| |||||| || | |||||||||| |||| Sbjct 1305 AACTCGGCAAATTGCACGCGTAACTTCGGAATAA 1338 >seq10295 Length=1395 Score = 77.0 bits (84), Expect = 3e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || | | || ||| || |||||||||||||| ||| | || | Sbjct 845 CGCAAACCGACACAGGTGGGCAGGATGAGAATTCTAAGGCGCTTGAGAGAACCCGGGAGA 904 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||||| |||||| | | | |||||||||||| || Sbjct 905 AGGAACTCGGCAAATTAGCACCGTAACTTCGGGAGAA 941 >seq6100 Length=2287 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| |||| |||| || || |||||| || | | || | |||| Sbjct 328 CGCAAACCGACACAGGTAGGCGGGGAGAGAATCCTAAGGTGCGCGGGAAAACCCTCGTTA 269 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG 122 ||||||| |||||| || ||| |||||||||||| || ||| Sbjct 268 AGGAACTCGGCAAAATGTCCCCGTAACTTCGGGAGAAGGGG 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531017116306