Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq17302 379 6e-103 seq31803 334 2e-89 seq3326 246 9e-63 seq23303 145 2e-32 seq14004 143 8e-32 seq19869 122 3e-25 >seq17302 Length=804 Score = 379 bits (420), Expect = 6e-103 Identities = 279/322 (87%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||| ||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 485 TACGGCCGCAAGATTGAAACTCAAAGAAATTGACGGGGGCCTACACAAGCGGTGGAGCAT 544 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| ||||||||||||| |||||||| | ||||| | Sbjct 545 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAACCCTTGACATGCCTTGACCGGTG 604 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | ||||| ||||||| |||| | |||||||| ||||||| ||||||||| Sbjct 605 CAGAGATGCACTTTTCCT-TTCGGGG-ACAGGGAGACAGGTGCTGCATGGCTGTCGTCAG 662 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 663 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCACTGTTAGTTGC 722 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 723 CATCATTAAGTTGGGCACTCTAGCAGAACTGCCGGTGACAAGCCGGAGGAAGGCGGGGAT 782 Query 301 GACGTCAAATCATCATGCCCCT 322 |||||||| || ||||| |||| Sbjct 783 GACGTCAAGTCCTCATGGCCCT 804 >seq31803 Length=312 Score = 334 bits (370), Expect = 2e-89 Identities = 263/311 (85%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 189 GTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCAT-T 247 ||||||||||||||||||||||||||||||||||||||||| || ||||||| || | Sbjct 1 GTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTATGTTGCCAGCACGT 60 Query 248 AA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTC 306 || | |||| |||| | |||||||| || || |||||||||||||||| |||||| Sbjct 61 AATGGTGGGAACTCATGGGAGACTGCCGTGGATAACACGGAGGAAGGTGGGGATGACGTC 120 Query 307 AAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAA-AGG 365 || ||||||||||||||||| ||||||||||||||| ||||||||| | || | ||| Sbjct 121 AAGTCATCATGCCCCTTATGTCTTGGGCTACACACGTACTACAATGGGCTTTAATAGAGG 180 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | |||||| ||||||||| |||| || |||| ||| | |||||||||||||||||| | Sbjct 181 GTAGCGAAGCCGCGAGGTGAAGCCAAACCCAAAAACAAGCTCTCAGTTCGGATTGTAGGC 240 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGA 485 ||||||||| ||| |||||| ||||||||||||||||| ||||||||||||| |||||| Sbjct 241 TGCAACTCGCCTACATGAAGTCGGAATCGCTAGTAATCGCAGATCAGCATGCTGCGGTGA 300 Query 486 ATACGTTCCCG 496 ||||||||||| Sbjct 301 ATACGTTCCCG 311 >seq3326 Length=3886 Score = 246 bits (272), Expect = 9e-63 Identities = 354/497 (71%), Gaps = 34/497 (7%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 2803 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 2862 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | || | | Sbjct 2863 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAATT--TTTATAAA 2913 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 | | ||| | | | ||||| | ||||||| ||||||||||||||| Sbjct 2914 AAAAATTTTAT----------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 2960 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244 | |||| ||||| |||||| ||| ||||||||||||||||| |||||||||| | Sbjct 2961 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCTTATCATTAGTTGCCACTTT 3020 Query 245 ATT-----AAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 ||| || ||||||||| | ||| | |||||||||||| Sbjct 3021 ATTTAAAAAATAAAAGCACTCTAATGAAAAAATTAATGATAGGTTAATGGAAGGTGGGGA 3080 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| || ||||| ||||||||| |||||||||||||||||||||||| | || Sbjct 3081 TGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATGATAATTA 3140 Query 360 CAAAGGGCAGCGAAACCG----CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 ||| | | || | | | || | ||||||| | |||| | |||||||||| Sbjct 3141 CAATGAGAGGCAATAATGATTCAAAGTTGGAGCAAAT-CTTTAAAAATTATCTCAGTTCG 3199 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT 475 ||| | ||| |||||| | ||||||| |||||||||||||||||| | | |||||| Sbjct 3200 AATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAAAACAGCAT 3259 Query 476 GCTACGGTGAATACGTT 492 | | ||||||||| ||| Sbjct 3260 GTTGCGGTGAATATGTT 3276 >seq23303 Length=550 Score = 145 bits (160), Expect = 2e-32 Identities = 89/95 (94%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 195 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGTCCGCACAAGCGGTGGAGCAT 136 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACC 95 |||||||||||||| | |||||| |||||||||| Sbjct 135 GTGGTTTAATTCGATGATACGCGAGGAACCTTACC 101 >seq14004 Length=1018 Score = 143 bits (158), Expect = 8e-32 Identities = 148/189 (78%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 832 TACGCCCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 891 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTG-ACCCCT 119 |||||||||||||| | |||||| |||||||||| ||||| | || || Sbjct 892 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAAAGTTAGTGAACGAGA 951 Query 120 CTAGAGATAG-AGGTTTCCCCTTCGGGGGAC-AGAGTGACAGGTGATGCATGGTTGTCGT 177 |||||||||| | | | ||||| || | | | ||||| ||||||| |||||| Sbjct 952 CTAGAGATAGTATCTAGAGCAATCGGGACACGAAACT---AGGTGCTGCATGGCTGTCGT 1008 Query 178 CAGCTCGTG 186 ||||||||| Sbjct 1009 CAGCTCGTG 1017 >seq19869 Length=681 Score = 122 bits (134), Expect = 3e-25 Identities = 84/95 (88%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| | |||||| |||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 183 TACGCCGGCAAGGGTGAAACTCAAAGAAATTGACGGGGGCCTACACAAGCGGTGGAGCAT 124 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACC 95 |||||||||||||| | |||||| |||||||||| Sbjct 123 GTGGTTTAATTCGATGATACGCGAGGAACCTTACC 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503465493440