Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq15772 365 7e-99 seq21710 266 5e-69 seq15329 221 2e-55 seq21545 163 5e-38 seq6457 122 1e-25 seq27439 98.7 2e-18 seq34654 95.1 2e-17 seq21306 95.1 2e-17 >seq15772 Length=893 Score = 365 bits (404), Expect = 7e-99 Identities = 236/257 (92%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 158 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 217 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 218 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 276 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| ||| || | ||||||||||||||||||||||||||||||||||| |||||| Sbjct 277 ACCCGCCAAAGCGGGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 336 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 337 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 396 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 397 AGAGCTCTCAATCTGTC 413 >seq21710 Length=607 Score = 266 bits (294), Expect = 5e-69 Identities = 197/226 (87%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 34 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGA 93 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | Sbjct 1 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCCTCGGCTTGC 60 Query 94 AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATG-GGGCTATTTAGCAG 152 | || | |||||||||||||||||||| | ||| || | || |||||| |||| || Sbjct 61 A-CCGAGAGTCCCTCTAAGAAGCCAGCGTACTGCCAAAG-CAATACGGGCTAGTTAGTAG 118 Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 |||||||||||||||||||||| |||||| | | ||| |||| |||| |||||||||||| Sbjct 119 GTTAAGGTCTCGTTCGTTATCGTAATTAAACTGCCAAGTCACCCCACGAACTAAGAACGG 178 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||| | ||||||||||||||| |||||||||| Sbjct 179 CCATGCACCACCACCCACAAAATCAAGAAAGAGCTCTCAATCTGTC 224 >seq15329 Length=923 Score = 221 bits (244), Expect = 2e-55 Identities = 171/200 (86%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 784 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATAGTC 134 ||||||| |||||| | |||| ||||||||||||||| || || | || || | Sbjct 785 GAACTTCCTTTGGCTTTGAACCAACAGTCCCTCTAAGAAGTGCACACA-TAGGCAAAGCC 843 Query 135 GA--TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | | |||||||| |||| ||||||||||||||| || |||||| |||||||||| Sbjct 844 TACGTTGAACTATTTAGTAGGTCGAGGTCTCGTTCGTTAACGCAATTAAGCAGACAAATC 903 Query 193 ACTCCACCAACTAAGAACGG 212 |||||||||||||||||||| Sbjct 904 ACTCCACCAACTAAGAACGG 923 >seq21545 Length=613 Score = 163 bits (180), Expect = 5e-38 Identities = 133/159 (84%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 459 GTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCT 518 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAA---CCATA 131 ||||||||| | ||| | | ||| ||||||||||||||| ||| | || | |||| Sbjct 519 CAAACTTCCTTATGCTTGCACACAA-AGTCCCTCTAAGAAGTCAGACCCCTATTTACATA 577 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170 | | ||| ||||||||||||||||||||||||| Sbjct 578 ---AAAGTAACTAGTTAGCAGGTTAAGGTCTCGTTCGTT 613 >seq6457 Length=2181 Score = 122 bits (134), Expect = 1e-25 Identities = 99/119 (83%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||| ||| ||| | ||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 1816 GGCTAGTTAA-AGGCTTAGGTCTCGTTCGTTATCTGAATTAACAAGACAGATCACTCCAC 1758 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||| ||| ||| | ||||||||||| ||||| || ||||| Sbjct 1757 GAACTGGAAACGGCCATGCACTACCCACCACACAATCAAGAAAGGGCTATTAACCTGTC 1699 Score = 87.8 bits (96), Expect = 3e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| ||| |||| | ||||| ||||||| |||||| ||||||||| ||||||||||| Sbjct 2012 CTCGCTGGTACCGTTATTGTAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGAC 1953 Query 63 CTGTTATTGCCTCAAACTTCC 83 ||||||| |||| || ||||| Sbjct 1952 CTGTTATGGCCTAAATCTTCC 1932 >seq27439 Length=426 Score = 98.7 bits (108), Expect = 2e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||||| |||| |||||| ||||| ||||||||||||||| || || | |||||||||| Sbjct 94 TCTCGTCCGTTGACGGAATCAACCAAACAAATCACTCCACCGACCAAAAGCGGCCATGCA 153 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| || | ||| ||||||| | |||||||||| Sbjct 154 CCACCATTCAGGGGATCGAGAAAGAACACTCAATCTGTC 192 >seq34654 Length=231 Score = 95.1 bits (104), Expect = 2e-17 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 CTCGTTGGCTGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 1 >seq21306 Length=621 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/102 (79%), Gaps = 11/102 (11%) Strand=Plus/Plus Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||||||||||| |||||| || ||| ||||||||||||||| || | Sbjct 258 AGGTCTCGTTCGTTAACGGAATCAATCAGTCAAATCACTCCACCA-----------CCCT 306 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||| |||||| |||||||||| | |||||||||| Sbjct 307 GCAGCACCACCTATAGAACCAAGAAAGAGTTCTCAATCTGTC 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796525674459