Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2775 363 3e-98 seq2487 363 3e-98 seq17320 327 2e-87 seq7666 197 2e-48 seq27410 188 1e-45 seq26665 168 1e-39 seq21628 87.8 3e-15 seq9689 84.2 4e-14 seq19758 82.4 1e-13 >seq2775 Length=4502 Score = 363 bits (402), Expect = 3e-98 Identities = 239/263 (91%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4001 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 3942 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || | | |||||||||||| ||||||||||||||||| Sbjct 3941 TTAGCGGGTGAACAATCCGACACGTTGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 3882 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3881 CATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 3822 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||| || | | ||||||||||||||| Sbjct 3821 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAACTTTTAAAG-TTAAAGGATCGATAGG 3763 Query 271 CCACACTTTCATGGTTTGTATTC 293 |||| |||||| ||||||||||| Sbjct 3762 CCACGCTTTCACGGTTTGTATTC 3740 >seq2487 Length=4953 Score = 363 bits (402), Expect = 3e-98 Identities = 239/264 (91%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 658 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 717 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || ||| |||| | | ||||||||||||||||| Sbjct 718 TTAGTGGGTGAACAATCCAACAATTGGCGACTTCTACGACACAATGATAGGAAGAGCCGA 777 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 778 CATCGAAGAATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 837 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||||| | | ||||||||||||||||| Sbjct 838 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCAAAAGAACTAAAGGATCGATAGG 897 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||| |||||| ||||||||||| Sbjct 898 CCACGCTTTCACAGTTTGTATTCA 921 >seq17320 Length=803 Score = 327 bits (362), Expect = 2e-87 Identities = 202/216 (94%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 72 AGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTTAGT 131 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| Sbjct 132 GGGTGAACAATCCAACACTTTGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCG 191 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || Sbjct 192 AAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCCTATG 251 Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG 251 |||| ||||||| |||||||||||||||| || ||| Sbjct 252 GTAATTTTTCTGACACCTCTAGCCTCAAACTTTGAG 287 >seq7666 Length=1872 Score = 197 bits (218), Expect = 2e-48 Identities = 147/172 (85%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||| ||||||||| | | || | |||||||||||||||||||||||| Sbjct 1470 TCATCAGTAGGATAAAGCTAACCTGTTTTACGATGATCTAAACCCAGCTCACGTTCCCTA 1529 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || | |||||| || | || | ||| ||| ||| ||||| ||||||| ||||||||| Sbjct 1530 TTTGCGGGTGAGCATTTCAGCAATTAGCGAGCTCTACTTCGCAATGATAGAAAGAGCCGA 1589 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC 202 |||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 1590 CATCGAAGAATCAAAAAGCAACGTCGCTATAGACGCTTGGCTGCCACAAGCC 1641 >seq27410 Length=427 Score = 188 bits (208), Expect = 1e-45 Identities = 138/159 (87%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| ||| || |||| | |||||||||||||||||||||||||||| Sbjct 160 TACTAAGTTGAATTACTGTTGCGGTGACGTTTCATCAGTAGGGTAAAACTAACCTGTCTC 101 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| |||||||||||||||||| || ||| | Sbjct 100 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTAGTGGGTGAACAATCCTACACTTGGTG 41 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 | |||||| | ||||||||||||||||||||||||| Sbjct 40 ACTTCTGCGACACAATGATAGGAAGAGCCGACATCGAAG 2 >seq26665 Length=447 Score = 168 bits (186), Expect = 1e-39 Identities = 102/108 (94%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTT 247 |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | | Sbjct 1 TGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCTTCACACGT 60 Query 248 CGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGAAGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 108 >seq21628 Length=610 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| |||| || | | |||||||||||||||||||||||||||||| Sbjct 71 TACTAAGTTGAATTACTATTGCGGTGCGGTTCATCAGTAGGGTAAAACTAACCTGTCTCA 12 Query 61 TGACGGTCTAA 71 |||||||||| Sbjct 11 CGACGGTCTAA 1 >seq9689 Length=1487 Score = 84.2 bits (92), Expect = 4e-14 Identities = 129/179 (72%), Gaps = 14/179 (8%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| |||| ||||| ||||| Sbjct 708 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 767 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA--AA 167 ||| ||| | | | || | | ||| || ||||||||||||| | |||| | Sbjct 768 CTTGGGACCTACTCCAGCCCC---AGGATGCGACGAGCCGACATCGAGGTGCCAAACCAT 824 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACA--AGCCAGTTATCCCTGTGGTAACTTTT 224 || ||||| |||| || ||||| || | | |||| |||||||| | |||| ||||| Sbjct 825 GC--CGTCGATATGGACTCTTGG--GCAAGATCAGCCTGTTATCCCCGAGGTACCTTTT 879 >seq19758 Length=685 Score = 82.4 bits (90), Expect = 1e-13 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 678 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACC 619 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | | || | | ||| || ||||||||||||| | |||| | Sbjct 618 CTTGGGACCTACTACAGCCCC---AGGATGTGATGAGCCGACATCGAGGTGCCAAACCTC 562 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| |||| || ||||| | | |||| |||||||| |||| ||||| Sbjct 561 CCCGTCGATATGGACTCTTGGGAGAGATTAGCCTGTTATCCCCAGGGTAGCTTTT 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854096354784