Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq19758 271 1e-70 seq9689 194 3e-47 seq6297 176 9e-42 seq13912 170 4e-40 seq29490 145 1e-32 seq1161 131 3e-28 >seq19758 Length=685 Score = 271 bits (300), Expect = 1e-70 Identities = 248/311 (80%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 29 TACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAAC 88 ||||| ||||| |||| || ||||||||||| |||| | | || |||| ||||||| Sbjct 218 TACGCTAGTATGTGTGGAGTCGTTGTTGGGATACCACCCTTTATTTACTGGAATTCTAAC 277 Query 89 CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCG 148 | | ||| | || | |||||||||||| ||||||||||||||||||||||| Sbjct 278 TTTAATA-GTAACGACATTAA--GGACAGTGTCAGGTGGGCAGTTTGACTGGGGCGGTCG 334 Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208 ||||| ||| ||||||||||||| ||||| | |||||||| || |||||| | ||| Sbjct 335 CCTCCGAAAATGTAACGGAGGCGCTCAAAGGTTCCCTCAGCGCGGTTGGAAATCGCGCGA 394 Query 209 ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 | |||||||||||| ||||| | |||||||||| || || ||| |||||||||||||| Sbjct 395 AGAGTGCAAAGGCAGAAGGGAGCTTGACTGCGAGACGTACAGGTCGAGCAGGGACGAAAG 454 Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328 |||| |||| |||||||| ||| | | ||||| |||| |||||| |||||||||||||| Sbjct 455 TCGGACTTAGTGATCCGGTGGTACCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGCTA 514 Query 329 CCCTGGGGATA 339 ||||||||||| Sbjct 515 CCCTGGGGATA 525 >seq9689 Length=1487 Score = 194 bits (214), Expect = 3e-47 Identities = 204/265 (77%), Gaps = 5/265 (2%) Strand=Plus/Minus Query 77 TGGATTTCTAAC--CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTT 134 ||||| |||||| || || |||| | ||| | ||||||||| | | ||| ||||| Sbjct 1122 TGGATATCTAACTTCGAAC--CGTAATCCGGTTCA-GGGACAGTGCCTGGTGGGTAGTTT 1066 Query 135 GACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGA 194 ||||||||||| |||||||||| |||||||||||||||||||| | |||||| | ||| Sbjct 1065 AACTGGGGCGGTTGCCTCCCAAAAAGTAACGGAGGCGCCCAAAGGTTCCCTCAACCTGGT 1006 Query 195 TGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCT 254 ||| || || | | |||| || ||| ||||| | ||||||| || || || ||| Sbjct 1005 TGGCAATCAGGTGTCGAGTGTAAGTGCACAAGGGAGCTTGACTGTGAGACTGACAGGTCG 946 Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 ||||||||||||||||||| || ||||||||| ||| ||||| || ||||||| Sbjct 945 AGCAGGGACGAAAGTCGGGACTAGTGATCCGGCAGTGGCTTGTGGAAGCGCTGTCGCTCA 886 Query 315 ACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| |||| ||||||| Sbjct 885 ACGGATAAAAGGTACCTCGGGGATA 861 >seq6297 Length=2229 Score = 176 bits (194), Expect = 9e-42 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||| ||| | |||| ||||||||||||| |||||||||| ||| ||||||||||| Sbjct 1470 GACATTGTTTGGCGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAGGTAACGGAGGCTT 1529 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| || ||||| | ||| |||| | ||| ||||||| ||||||| || | Sbjct 1530 TCAAAGGTAAGCTCAGTACGCTTGGTAACCGTACGCGGAGTGCAATAGCAAAAGCTTGCT 1589 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || || |||| | | ||||| |||||| ||| | || |||||||| ||| | Sbjct 1590 TGACTGTGAGACAAACAAGCCGACCAGGGTCGAAAGACGGACATAGTGATCCGGTGGTTC 1649 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || |||||| |||| |||||| | ||||||||| ||| ||||||||| Sbjct 1650 TGCATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACGCTGGGGATA 1696 >seq13912 Length=1025 Score = 170 bits (188), Expect = 4e-40 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133 TTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTG 192 ||||||||||||||| ||||||||||||||||||||| | | ||| || ||| | | Sbjct 1 TTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGTGCGAAGGTAACCTAGGTACG 60 Query 193 GATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGT 252 | ||||| | | | | ||||||| ||||||||| || |||||||||| || || || Sbjct 61 GTCGGAAATCGTACTGATAGTGCAATGGCAAAAGGTTGCTTGACTGCGAGACGGACAGGT 120 Query 253 CTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCT 312 | |||||| |||||| || | || |||||||| ||| ||| |||||| |||| ||||| Sbjct 121 CGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCT 180 Query 313 CGACGGATAAAAGCTACCCTGGGGATA 339 | ||||||||||| ||| || |||||| Sbjct 181 CAACGGATAAAAGGTACTCTAGGGATA 207 >seq29490 Length=372 Score = 145 bits (160), Expect = 1e-32 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||| ||| | ||| ||||||||||||| |||||||||| ||| ||||||||||| Sbjct 198 GACATTGTTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAGGTAACGGAGGCTT 139 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| || ||||| | ||| |||| | ||| ||||||| |||| ||| || | Sbjct 138 TCAAAGGTAAGCTCAGTACGCTTGGTAACCGTACGCGGAGTGCAATGGCATAAGCTTGCT 79 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || ||| |||||| | ||||| |||||| ||| | || |||||||| ||| | Sbjct 78 TGACTGTGAGACCAACAAGTCGACCAGGGTCGAAAGACGGACATAGTGATCCGGTGGTTC 19 Query 293 TGAATGGAACGGCCGTCG 310 || |||||| |||| ||| Sbjct 18 TGTATGGAAGGGCCATCG 1 >seq1161 Length=8540 Score = 131 bits (144), Expect = 3e-28 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||||| | || |||||||||||||||||| ||||| ||||||||||||||| || Sbjct 7251 GACAGTGTATGGTTGGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGC 7310 Query 173 CCAAAGATACCCTCAGCTTGG--ATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 ||||| || |||| |||| || ||| || | | |||| || || ||||| || Sbjct 7311 ACAAAGGTAAGCTCAAATTGGACATTAAAATCAATTGTAGAGTGTAATGGTAAAAGCTTG 7370 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| | | || || | |||||||||||||||| | || ||||||| | Sbjct 7371 CTTGACTGTAAGATAGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAAT 7430 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| | |||||| ||||||||||| ||| | ||||||| Sbjct 7431 TCTTTGTGGAAAGATTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 7479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982050864864