Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq6297 187 3e-45 seq30999 158 1e-36 seq14940 145 8e-33 seq19173 131 2e-28 seq9689 131 2e-28 seq19758 129 6e-28 seq1161 127 2e-27 seq10295 114 1e-23 >seq6297 Length=2229 Score = 187 bits (206), Expect = 3e-45 Identities = 129/150 (86%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||||| | |||||||| |||| ||||||||||||| |||||||||| || Sbjct 1321 GGGGTCTTTCCGTCCCGTTGCGGGTAACCGGCGTCTTCACCGATACCACAATTTCACCGA 1262 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 ||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 1261 GCTCATGGCTGAGACAGCGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCG 1202 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 1201 ACAAGGAATTTCGCTACCTTAGGACCGTTA 1172 >seq30999 Length=333 Score = 158 bits (174), Expect = 1e-36 Identities = 110/129 (85%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||| Sbjct 205 GGGTCTTTTCGTCCCACTGCGGGTAAACGGCATCTTCACCGTTACTACAATTTCACCGAG 264 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 |||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct 265 CTCATGGCTGAGACAGTGTCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGA 324 Query 145 CAAGGAATT 153 ||||||||| Sbjct 325 CAAGGAATT 333 >seq14940 Length=947 Score = 145 bits (160), Expect = 8e-33 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 53 GGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNNNNNN 112 |||||||||||||||||||||||||||| | |||| ||| ||||||| Sbjct 947 GGCATCTTCACCGATACTACAATTTCACCGGGCTCGCGGAGGAGACAGTGTGCAACTCAT 888 Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 TCTACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 828 Query 173 ANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 | ||||||||||||||| Sbjct 827 ATAGTTACGGCCGCCGTTTACTGGGGCTTC 798 >seq19173 Length=713 Score = 131 bits (144), Expect = 2e-28 Identities = 118/150 (79%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||||| | | |||||||||| | | | ||||||| ||||| Sbjct 563 GGGTCTTTCCGTCTGACCGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 504 Query 85 CTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || |||| |||||| ||| ||||||||||||||||||||||||||| Sbjct 503 -TCGGTGTTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 445 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 444 ACAAGGAATTTCGCTACCTTAGGACCGTTA 415 >seq9689 Length=1487 Score = 131 bits (144), Expect = 2e-28 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| ||| |||| ||||||| || || | ||||||| | | Sbjct 1243 CGGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCGCCG 1302 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || || |||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1303 AGTTCGCGGTTGAGACAGTTGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1362 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTT 201 ||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1363 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 1421 >seq19758 Length=685 Score = 129 bits (142), Expect = 6e-28 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||||||| | |||||||||| | || | ||||||||| | Sbjct 143 GGGGTCTTTCTGTCCAGTCGCGGGTAACCTGCATCTTCACAGGTATTTCAATTTCACCGG 84 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | |||||||||| |||||| ||||||| |||||||||||||||| Sbjct 83 GTCCCTCGTTGAGACAGTGCCCAAGTCGTTACACCTTTCGTGCGGGTCGGAACTTACCCG 24 Query 144 ACAAGGAATTTCGCTACCTTAGG 166 ||||||||||||||||||||||| Sbjct 23 ACAAGGAATTTCGCTACCTTAGG 1 >seq1161 Length=8540 Score = 127 bits (140), Expect = 2e-27 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 7102 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 7043 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 7042 AGTTTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 6983 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 6982 GACAAGGAATTTCGCTACCTTAGGACCGT 6954 >seq10295 Length=1395 Score = 114 bits (126), Expect = 1e-23 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | |||||||||| | | | ||| ||| |||| Sbjct 1296 GGGGTCTTTCCGTCTAGCCGCGGGGAGATTGCATCTTCACAAACATTTCAACTTCGCTGA 1237 Query 84 GCTCACG-GTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || || | ||||||| ||| |||||||||| ||||||||||||||| Sbjct 1236 G-TCCCGAGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCGGGTCGGAACTTACCC 1178 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 1177 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547011607761