Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq20578 331 2e-88 seq29971 221 3e-55 seq25714 205 2e-50 seq35435 183 7e-44 seq14004 178 3e-42 seq3326 120 7e-25 seq16444 109 1e-21 seq15072 109 1e-21 seq16614 107 4e-21 seq12548 82.4 2e-13 >seq20578 Length=651 Score = 331 bits (366), Expect = 2e-88 Identities = 235/267 (88%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACAGATCGTCGC 60 Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAA 220 ||||||||||| ||||| |||||||||||||||| ||| | |||||||||||||||| | Sbjct 61 CTTGGTGAGCCTTTACCCCACCAACTAGCTAATCTGACATGGGCTCATCTGATAGCGAGA 120 Query 221 GGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGA 280 || |||||| ||||| ||||| ||||||||||||||||||||||||||| | |||| | Sbjct 121 GGTCCGAAGATCCCCCCCTTTCCCCCGTAGGACGTATGCGGTATTAGCGTTCCTTTCGAA 180 Query 281 ACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAA 340 ||||| ||||||||||||||||||||||| | | ||||||||||||| ||||||| | Sbjct 181 ACGTTGTCCCCCACTACCAGGCAGATTCCCATGTATTACTCACCCGTTCGCCGCT-GCTT 239 Query 341 GAGAAGCAAGCTTCTCTCTACCGCTCG 367 | |||||||| | ||| |||||||| Sbjct 240 CGGTAGCAAGCTAC-CTCAACCGCTCG 265 >seq29971 Length=359 Score = 221 bits (244), Expect = 3e-55 Identities = 133/139 (96%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 231 TCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCC 290 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 359 TCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAGCGTTATCCC 300 Query 291 CCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT--CTCAAGAGAAGCA 348 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 299 CCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTGAATCAAGAGAAGCA 240 Query 349 AGCTTCTCTCTACCGCTCG 367 ||||||| ||| ||||||| Sbjct 239 AGCTTCTGTCTTCCGCTCG 221 >seq25714 Length=474 Score = 205 bits (226), Expect = 2e-50 Identities = 162/192 (84%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||||||||||||| || | | | |||||||| ||| | |||||| || | |||| Sbjct 208 TTTACAATCCGAAGACCGTCATCCTC-CACGCGGCGTTG-CACCATCAGGGTTGCCCCCA 265 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| | ||||| | ||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 266 TTGTGAATTATTCTCGACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTCAGTTCCAGT 325 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||| |||||||||||||| ||| |||| ||||||||||||| ||||||||| Sbjct 326 GTGCCTGATCGTCCTCTCAGACCAGGTACCCGTCGTAGCCTTGGTGAGCCGTTACCTCAC 385 Query 182 CAACTAGCTAAT 193 |||| |||| || Sbjct 386 CAACAAGCTGAT 397 >seq35435 Length=631 Score = 183 bits (202), Expect = 7e-44 Identities = 122/136 (90%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 200 TAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGC 259 ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 2 TAGGCTCATCTATTAGCGCAAGGTCCGAAGATCCCCTGCTTTCTCCCGTAGGACGTATGC 61 Query 260 GGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTAC 319 ||||||||| | | |||| || ||| |||||||||| ||||||||||||| ||||||| Sbjct 62 GGTATTAGCATTCCTTTCGAAATGTTGTCCCCCACTAATAGGCAGATTCCTAAGCATTAC 121 Query 320 TCACCCGTCCGCCGCT 335 |||||||||||||||| Sbjct 122 TCACCCGTCCGCCGCT 137 >seq14004 Length=1018 Score = 178 bits (196), Expect = 3e-42 Identities = 139/165 (84%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| |||||| |||| ||| || |||||| |||||||||| ||||||||||| Sbjct 354 CACGCGGCAT-GGCTGGTTCAGACTTCCGTCCATTGACCAATATTCCTTACTGCTGCCTC 296 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| | |||||||||||| | | Sbjct 295 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCTCAGATCCCCT 236 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 | ||||||||||||||| ||| ||||| | ||||||||||||| Sbjct 235 AGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAAT 191 >seq3326 Length=3886 Score = 120 bits (132), Expect = 7e-25 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 2346 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 2288 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 2287 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 2229 Query 144 CAGTTACGGATCGTCGCCTTGGT 166 ||| || ||| | | |||||| Sbjct 2228 CAGCTAAAGATAATAGGCTTGGT 2206 >seq16444 Length=849 Score = 109 bits (120), Expect = 1e-21 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC 150 |||||||||||| |||||||||||| |||||||| ||| |||||||||| | || Sbjct 1 GTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAG 60 Query 151 GGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 ||||||||||||||| ||| ||||| ||||||||||||||| Sbjct 61 ACATCGTCGCCTTGGTGGGCCGTTACCCCACCAACTAGCTAAT 103 >seq15072 Length=938 Score = 109 bits (120), Expect = 1e-21 Identities = 154/217 (71%), Gaps = 16/217 (7%) Strand=Plus/Plus Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| || Sbjct 1 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 60 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCT 239 ||||||||||||||| || ||| || | ||||| | | || Sbjct 61 CCAACTAGCTAATCCAACGCGGGCCAAT---------CCTTCCCCGATAAAT------CT 105 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| |||||||| ||||| |||||||| | |||||| | | ||| || | | Sbjct 106 TTCCCCCGTAGGGCGTATACGGTATTAATTCCAGTTTCCCAGAGCTATTCCGTAGAAAAG 165 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || | |||| | || ||||||||||||| ||| ||| Sbjct 166 GGTATGTTCCCACGCGTTACTCACCCGTCTGCCACTC 202 >seq16614 Length=840 Score = 107 bits (118), Expect = 4e-21 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 ||||||||||||||||||| || ||||||||||||||||| ||| ||||| ||||||||| Sbjct 1 GATCATCCTCTCAGACCAGCTAAGGATCGTCGCCTTGGTGGGCCTTTACCCCACCAACTA 60 Query 188 GCTAATCCGACCTAGGCTCATC 209 |||||||| || |||||||| Sbjct 61 GCTAATCCTACGCGGGCTCATC 82 >seq12548 Length=1145 Score = 82.4 bits (90), Expect = 2e-13 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 |||||||||| |||||||| |||| |||||||| | ||| ||| | ||||||| Sbjct 1145 GTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACCCATCATAGCCTTGG 1086 Query 166 TGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCT 210 | |||| |||||| |||||||||||||| ||| | || ||||| Sbjct 1085 TAAGCCGTTACCTTACCAACTAGCTAATGGGACGCATGCCCATCT 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071619021920