Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq35475 192 9e-47 seq14088 141 1e-31 seq7967 136 6e-30 seq4366 118 2e-24 seq3355 107 3e-21 seq18181 80.6 4e-13 seq5757 75.2 2e-11 >seq35475 Length=394 Score = 192 bits (212), Expect = 9e-47 Identities = 154/186 (83%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 60 CGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTC 119 ||| ||||| |||||||| || |||||||||||||| || ||||||||||| |||||||| Sbjct 391 CGGAGCCGGGGCTTCTTCGAGAACCTTCTGGTGACGGCGCTGCAGCGAGCAGTCGCGGTC 332 Query 120 GCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGG 179 | ||| |||||||||| |||||||| |||||||| || || |||||||||||||| || Sbjct 331 GTACAGATGGATGGCGTTACCCTGGCCATCGGACAGCACCTGGACTTCCACGTGACGCGG 272 Query 180 GTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGA 239 ||| ||| |||| || ||||||||||||||||||||||| | |||||||||| Sbjct 271 ATTGCCAAGGAACTTCTCGAGGTAGACCATCGGGTTGCCGAATACCGAGCCCGCTTCGCT 212 Query 240 GCGAGT 245 ||| || Sbjct 211 GCGGGT 206 >seq14088 Length=1012 Score = 141 bits (156), Expect = 1e-31 Identities = 133/167 (80%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 |||||| ||||||||||| || | ||||||||||| || || |||| |||||| ||||| Sbjct 673 GCCCGGGGCCGGCGCTTCCTCGACGACCTTCTGGTGGCGGCGCTGCATCGAGCAGTCGCG 732 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||||||||| ||| |||||||||||||| ||||| || | |||||||| || Sbjct 733 TTCGCCCAGGTGGATCGCGCCGCCCTGGCCGTCGGCGAGTACCTGGATCTCCACGTGGCG 792 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCG-GGTTGCCGAAC 222 || || |||| |||| |||| ||| ||| ||| ||||||||| Sbjct 793 CGGATTCTCCAGGAACTTCTCCATGTACACC-TCGCCATTGCCGAAC 838 >seq7967 Length=1809 Score = 136 bits (150), Expect = 6e-30 Identities = 132/167 (79%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 |||||| ||||| || ||||||| ||||||||||| || || |||| |||||| ||||| Sbjct 1222 GCCCGGCGCCGGTGCCTCTTCCACCACCTTCTGGTGGCGGCGCTGCATCGAGCAGTCGCG 1163 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 || || ||||||||||| | |||||| || |||| ||| || || | ||||||||| || Sbjct 1162 CTCACCGAGGTGGATGGCATTGCCCTGTCCATCGGCCAGCACCTGGATTTCCACGTGGCG 1103 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCG-GGTTGCCGAAC 222 || || |||| |||| |||| ||||||| ||| ||||||||| Sbjct 1102 CGGATTCTCCAGGAACTTCTCCATGTAGACC-TCGCCATTGCCGAAC 1057 >seq4366 Length=3070 Score = 118 bits (130), Expect = 2e-24 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||| || ||||||||||| || | ||||||||||| || || |||| ||||| ||||| Sbjct 1932 GCCGGGAGCCGGCGCTTCCTCGATGACCTTCTGGTGGCGGCGCTGCATGGAGCAGTCGCG 1991 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||||| || ||| | || ||| ||||| ||| | || | |||||| || || Sbjct 1992 CTCGCCCAGGTAGACGGCATTGCGATGGTTGTCGGCCAGGATCTGGATTTCCACATGGCG 2051 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAA 221 ||||| |||| |||| |||| |||||| ||| |||||||| Sbjct 2052 CGGGTTCTGCAGGAACTTCTCCATGTAGACGGCCGGATTGCCGAA 2096 >seq3355 Length=3849 Score = 107 bits (118), Expect = 3e-21 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 |||||| |||||||| ||||| | ||||||||||| || || |||| ||||| ||||| Sbjct 2555 GCCCGGCGCCGGCGCCTCTTCGATCACCTTCTGGTGGCGGCGCTGCATGGAGCAGTCGCG 2614 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||||| | ||| | || || ||||| ||| || || | || | ||| || Sbjct 2615 CTCGCCCAGGTACACGGCATTGCGGTGCTTGTCGGCCAGCACCTGGATCTCGATGTGGCG 2674 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTC 236 ||||| ||| |||| |||| ||| || || |||||||| ||||||||| || Sbjct 2675 CGGGTTCTGGAGGAACTTCTCCATGTACACGGCAGGATTGCCGAATGCGGCGCCCGCCTC 2734 Query 237 GG 238 || Sbjct 2735 GG 2736 >seq18181 Length=758 Score = 80.6 bits (88), Expect = 4e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 || |||||| || || ||||||||||| ||||||||||| || || |||| |||||| || Sbjct 637 CATGCCCGGCGCGGGTGCTTCTTCCAGCACCTTCTGGTGGCGGCGCTGCACCGAGCAGTC 696 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCG 150 ||| ||| ||||| || || | || |||| |||| Sbjct 697 GCGCTCGAACAGGTAGACCGCCTCACCGTGGCTGTCG 733 >seq5757 Length=2418 Score = 75.2 bits (82), Expect = 2e-11 Identities = 85/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 66 CGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAG 125 |||||| ||||| | ||||||||||| || || || | |||||| ||||| ||| ||| Sbjct 1723 CGGCGCCTCTTCGATCACCTTCTGGTGGCGGCGCTGGATCGAGCACTCGCGCTCGTTCAG 1782 Query 126 GTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGG 179 || |||| ||| ||| |||| |||| ||| || || | || | ||| || || Sbjct 1783 GTAGATGACGTTGCCGTGGCTGTCGCCCAGCACCTGGATCTCGATGTGGCGCGG 1836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735746606930