Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001187.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq28502 212 9e-53 seq2994 96.9 5e-18 seq5418 73.4 6e-11 >seq28502 Length=397 Score = 212 bits (234), Expect = 9e-53 Identities = 155/179 (87%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 7 GCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGATTTCC 66 ||| ||| || ||||| ||||||||||| ||||||||| |||||||| |||||||||||| Sbjct 184 GCAGGCGATAGAGGCGGCGCTTGAGCTT-GCCCAGGTATTGCATGCGGGCGACGATTTCC 126 Query 67 TGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAGCATT 126 |||||||||||||| || ||||||||||| ||||| || |||||||||||||||| ||| Sbjct 125 TGGCCGGTGTAGCAACCCTTCTTGAAGCTCACGCCACCTACGGCCTGCAGGTTGATCATC 66 Query 127 TGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCGGCGCGGGTCTG 185 ||||||||||||||||||||||| | | | ||||| || |||||||||||| |||| Sbjct 65 TGCGGGATGAACAGCTCGCGGGTCGTCCCGGTCACCTGACCCATGCCGGCGCGGATCTG 7 >seq2994 Length=4223 Score = 96.9 bits (106), Expect = 5e-18 Identities = 93/118 (79%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 20 GCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGATTTCCTGGCCGGTGTAGC 79 ||| |||||||| | ||| || |||| |||| || || | |||||||||| ||||| Sbjct 3982 GCGGCGCTTGAGGGT-GCCGCGGAACTGGCTGCGGGCCACTACCTCCTGGCCGGGGTAGC 4040 Query 80 AGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAGCATTTGCGGGATGAA 137 |||| ||||||||| | ||||||||||||| || ||||||||||||||| | ||| Sbjct 4041 AGCCCTTCTTGAAGTTCACGCCGCCGACGGACTCGTAGTTGAGCATTTGCGGCACGAA 4098 >seq5418 Length=2550 Score = 73.4 bits (80), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 23 ACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGATTTCCTGGCCGGTGTAGCAGC 82 ||||||| || ||||| ||| | || |||| ||||||||||||||||||| ||||||| Sbjct 663 ACGCTTG-GCCTTGCCGAGGAAGTGGGTGCGGGCGACGATTTCCTGGCCGGGATAGCAGC 721 Query 83 CTTTCTTGAAGCTGACGCCG 102 | ||||| | |||| |||| Sbjct 722 CCTTCTTCACGCTGTAGCCG 741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735746606930