Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq21975 509 6e-142 seq17378 203 1e-49 seq34341 176 2e-41 seq10159 84.2 8e-14 seq34567 80.6 1e-12 >seq21975 Length=597 Score = 509 bits (564), Expect = 6e-142 Identities = 377/431 (87%), Gaps = 7/431 (2%) Strand=Plus/Minus Query 1 TCGATCGCCTTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAA 60 |||||| ||| |||||| |||||||||| |||| |||||| |||||||| |||||||| Sbjct 424 TCGATCTGCTT-GGCACGTGAAGTGGCCT-GCTT-GGCTTTG-GAGGCGTTGGCCGAGAA 369 Query 61 ACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGA 120 ||||| |||||||| | |||||||||| |||||| || ||||| ||||||||||||||| Sbjct 368 GCGGCT-GACGAAGG-TCTGCAGCTCGGCGATCTGGGCTTTCTT-CTTGGCGTTGTCCGA 312 Query 121 CAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 180 |||||| ||||| || |||||||| || |||||||||||||||| |||||||||||||| Sbjct 311 CAGCAGCTGCTCACGCGACTGGGTGGCTGCGGTCATGTACTCGTCATAGTTGCCCGGGAA 252 Query 181 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTG 240 |||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| Sbjct 251 CAGGCGCAGCTCGCCGTAATCCAGGTCAGCCATGTGGGTGCAGACGCTGTTGAGGAAGTG 192 Query 241 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCA 300 |||||||| || ||||||||||| |||| |||| || ||||| |||||||||| Sbjct 191 CCGGTCGTGGGAAATGATGATCATGGTGCTGTTACGCGCCGTGAGGATCGTTTCCAGCCA 132 Query 301 GCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 360 |||||||||||||||||||| ||||||||||||||||||||||| |||||| || || || Sbjct 131 GCGGATGGTGTTGATGTCCAGGTGGTTGGTCGGTTCGTCGAGCAGCAGCACGTCCGGGTC 72 Query 361 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCAT 420 || ||||||||||||||||||| |||||||||||||||||||| | |||||||||||| Sbjct 71 CGAGAACAGCGCCTGGGCCAGCAGGACACGCAGCTTCCAGCCCGGAGCCACTTCGCTCAT 12 Query 421 CGGACCGAAGT 431 ||| ||||||| Sbjct 11 CGGGCCGAAGT 1 >seq17378 Length=800 Score = 203 bits (224), Expect = 1e-49 Identities = 208/272 (76%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 332 GGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGC 391 ||||||||||||| ||| | || || | || ||||||||||| ||||||| |||||| Sbjct 800 GGTTCGTCGAGCAGCAGGATGTCCGGGTTAGAGAACAGCGCCTGCGCCAGCAGAACACGC 741 Query 392 AGCTTCCAGCCCGGGGACACTTCGCTCATCGGACCGAAGTGCTGCTCCAGCGGAATACCC 451 ||||||||||| || | |||||||||||| ||||| | ||||| || | |||||| ||| Sbjct 740 AGCTTCCAGCCTGGCGCGACTTCGCTCATCAGACCGTAATGCTGTTCAACCGGAATGCCC 681 Query 452 AGACCCAGCAGCAGCTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAAC 511 | |||||||||||||||||||||||||| || || | |||||| ||||| ||| || || Sbjct 680 ACGCCCAGCAGCAGCTCACCGGCACGGGACTCCGCAGAGTAGCCATCCATTTCGCCGTAC 621 Query 512 TCGGTTTCCAGCTCGGCCACGGCCATGCCGTCTTCTTCGCTCATTTCCGGCAGCGAGTAA 571 ||| || |||||||| ||| ||||||||||||||||| | || | || Sbjct 620 AGCACTTCGAGGTCGGCCACTTTATAGCCATCTTCTTCGCTCATTTCGGCAAGGGCATAG 561 Query 572 ATACCATCACGCTCGGCCTTGACCTTCCACAG 603 || | || ||||| ||| || | |||||| Sbjct 560 ATGCGGTCGCGCTCCTGCTTCACTTCCCACAG 529 >seq34341 Length=242 Score = 176 bits (194), Expect = 2e-41 Identities = 183/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 251 GAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTG 310 || || ||||| || |||| |||| ||||||| |||| |||||||| || ||| Sbjct 3 GAAATAATGATAATGGTGCTGTTGCGCTCACTCAGGATGGTTTCAAGCCAGCGAATAGTG 62 Query 311 TTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGC 370 ||||| || | || |||||| |||||||| ||||||| ||||| |||||||| || ||| Sbjct 63 TTGATATCGAGGTTGTTGGTGGGTTCGTCCAGCAACAATACTTCCGGATCGGAGAATAGC 122 Query 371 GCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCATCGGACCGAAG 430 || || |||| || || |||| |||||||| || | |||| | ||||| | || || Sbjct 123 GCTTGCGCCAATAACACGCGCAATTTCCAGCCTGGCGCCACTGCACTCATGAGGCCAAAA 182 Query 431 TGCTGCTCCAGCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGGATTCGGCGGTG 490 || ||||||| |||||| |||| || |||| | |||||||||||| || ||||||||| Sbjct 183 TGTTGCTCCACAGGAATATCCAGCCCGAGCAATAACTCACCGGCACGCGACTCGGCGGTG 242 >seq10159 Length=1414 Score = 84.2 bits (92), Expect = 8e-14 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 292 TTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCAC 351 ||| |||||| ||||| | |||||||| |||||||||||||||||| |||| |||||| Sbjct 578 TTCGAGCCAGTCGATGGCTTCGATGTCCAGGTGGTTGGTCGGTTCGTCCAGCAGCAGCAC 519 Query 352 TTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACA 410 || || ||| | ||| || ||||||||| || || ||||| ||| ||||| Sbjct 518 GTCCGGGCTGGAGACCAGTGCACGGGCCAGCAGCACGCGGCGCTTCATGCCGCCGGACA 460 >seq34567 Length=234 Score = 80.6 bits (88), Expect = 1e-12 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 292 TTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCAC 351 |||||||||| ||| | | |||||| | |||||||||||||||||| |||| ||| | Sbjct 113 TTCCAGCCAGGCGATCGCCTCGATGTCGAGGTGGTTGGTCGGTTCGTCCAGCAGCAGGAT 172 Query 352 TTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACA 410 || |||| | | ||||||||| ||||||| || || ||||| ||| ||||| Sbjct 173 GTCGGGATTGCGCACCAGCGCCTGCGCCAGCAGCACGCGGCGCTTCATGCCGCCGGACA 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1880910401244