Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001286.1 Length=411 Score E Sequences producing significant alignments: (Bits) Value seq24690 425 1e-116 >seq24690 Length=506 Score = 425 bits (470), Expect = 1e-116 Identities = 336/403 (83%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 9 GGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGAGCGTGTCATAAGG 68 |||||||||||||| |||||||||||||||| | | | |||| || |||||| || Sbjct 506 GGCCCGTCATAGCCATGGCAGAACTGCAGGATGCGCGGTTCAGAGCGGCTGGTCATACGG 447 Query 69 GTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCC 128 | || |||||||||| || |||||||||||||||||||||||||| |||||||| ||||| Sbjct 446 GGCCGCGCCGTCCTTCACAACCAGGATGTCTTCCATGATCAGGTACTGCAGGTCCGAGCC 387 Query 129 AAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGGTTGAG 188 |||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||| || Sbjct 386 GAAGAACATGTTCAGGGCGTCGGTCGGCGAGCAGATCATCGGTTCGCCACGGCGGTTCAG 327 Query 189 CGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATGTCGTA 248 ||| ||||||||||| ||||||||||| || || ||||||||| ||||| |||||| Sbjct 326 CGAAGTGTTCAGGGATACGCCGTTGCCAGTGAGTTTTTCCAGCTCCAGCATCAGGTCGTA 267 Query 249 GTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGAC 308 |||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| Sbjct 266 CCAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAAGTACCGTCTTCGTGGAC 207 Query 309 CACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGG 368 ||||| || || ||||||||| || || || |||||||||||||||||||| Sbjct 206 GACTTCGCTGACCCGCTCCTTCCACTCGTCATTGACCTCGAAGGTGAAGGTCATGAACGG 147 Query 369 CGCCGGGTGATCGACCTTGATCATCTGCGGGGCCACGGTGTCG 411 |||||| |||||||||| ||||||| ||| ||||||||| Sbjct 146 GCTCGGGTGGTCGACCTTGAGCATCTGCTCGGCGACGGTGTCG 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1212368983008