Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001377.1 Length=151 Score E Sequences producing significant alignments: (Bits) Value seq16547 123 2e-26 seq4636 98.7 8e-19 seq1765 98.7 8e-19 >seq16547 Length=844 Score = 123 bits (136), Expect = 2e-26 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 21 ATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTGTCCGGCGGC 80 ||||||| ||||||| ||||| ||| |||| | || | || ||||||||||||||| Sbjct 642 ATCGCCCGCGTGCGCGAACAGGTGGGCGATGACGAAGTGATCCTGGGCCTGTCCGGCGGC 701 Query 81 GTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGC 140 || || || || || || || |||||||||||||||||||||||||| | ||||||||| Sbjct 702 GTCGATTCGTCCGTCGTGGCCGCACTGCTGCACAAGGCCATCGGCGAGAAGCTGACCTGC 761 Query 141 GTGTTTGTCGA 151 ||||| || || Sbjct 762 GTGTTCGTGGA 772 >seq4636 Length=2904 Score = 98.7 bits (108), Expect = 8e-19 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 63 CTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATC 122 || ||||||||||||||||| ||||| ||||||| || || ||| | ||| ||||||| Sbjct 2729 CTGGGCCTGTCCGGCGGCGTGGACTCGTCGGTTGCCGCCGCGCTGATCCACCGGGCCATC 2788 Query 123 GGCGACCAACTGACCTGCGTGTTTGTCGA 151 |||||||| || ||||||||||| ||||| Sbjct 2789 GGCGACCAGCTCACCTGCGTGTTCGTCGA 2817 >seq1765 Length=6308 Score = 98.7 bits (108), Expect = 8e-19 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 63 CTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATC 122 || ||||||||||||||||| ||||| ||||||| || || ||| | ||| ||||||| Sbjct 824 CTGGGCCTGTCCGGCGGCGTGGACTCGTCGGTTGCCGCCGCGCTGATCCACCGGGCCATC 883 Query 123 GGCGACCAACTGACCTGCGTGTTTGTCGA 151 |||||||| || ||||||||||| ||||| Sbjct 884 GGCGACCAGCTCACCTGCGTGTTCGTCGA 912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383867794920