Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq15329 77.0 2e-12 seq2487 77.0 2e-12 seq21545 71.6 8e-11 seq15772 71.6 8e-11 seq2775 71.6 8e-11 >seq15329 Length=923 Score = 77.0 bits (84), Expect = 2e-12 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||| | ||||||||||| |||||||||||||||||||| Sbjct 526 CTCACTAATGCATT-CAATCGGTAGCA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 583 Query 109 TAAT 112 |||| Sbjct 584 TAAT 587 >seq2487 Length=4953 Score = 77.0 bits (84), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 4873 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 4930 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||| ||||||| Sbjct 4931 GGACGTAAT-CAATGCAAGCT 4950 >seq21545 Length=613 Score = 71.6 bits (78), Expect = 8e-11 Identities = 52/58 (90%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| |||||||||||||||||||||||| || | |||||| Sbjct 273 TCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAGCACAAGCT 328 >seq15772 Length=893 Score = 71.6 bits (78), Expect = 8e-11 Identities = 44/46 (96%), Gaps = 1/46 (2%) Strand=Plus/Plus Query 79 GACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 1 GACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 45 >seq2775 Length=4502 Score = 71.6 bits (78), Expect = 8e-11 Identities = 52/58 (90%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| |||||||||||||||||||||||| || | |||||| Sbjct 225 TCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAGCACAAGCT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300699780020