Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001416.1 Length=341 Score E Sequences producing significant alignments: (Bits) Value seq29258 351 2e-94 seq15282 161 2e-37 seq8456 152 1e-34 >seq29258 Length=377 Score = 351 bits (388), Expect = 2e-94 Identities = 280/336 (83%), Gaps = 1/336 (0%) Strand=Plus/Plus Query 5 TTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATGGTG 64 ||||||||| | |||||||||| || | |||||||||||||||||| || ||||||||| Sbjct 12 TTGAGCTTGTTGGCCACCGGCAGCAGGATCAGGTTGGCACTGGCCACACCATAGATGGTG 71 Query 65 GCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCCCATC 124 ||||| || |||||||| |||||| | ||||||||||| || ||||| |||||||||||| Sbjct 72 GCGACGAAGGCCACGGCGATGCCGTTACCCAGTTGCGACGGATCGGCCAGGTTGCCCATC 131 Query 125 ACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATG 184 || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 132 ACATGGATCAAGCCCATCACCGCACCGATGATACCGATGGTCGGCGCGTAGCCGCCCATG 191 Query 185 CTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCACTTC 244 || || ||||| ||||| || | ||| || ||||| |||||||| | ||| || || || Sbjct 192 CTCTCGAAGACCTTGGCAGCCTGGATGTCACGGCTCTCCTGGGT-GAGGAAGTCGACCTC 250 Query 245 CCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTTTGCG 304 ||| ||||| |||| || ||||| |||||||| ||||||| |||| |||||||| Sbjct 251 GAGAATGCTGCGGATCGACTCAGGCTCCGCGCCGTCGACCAGCAACTGCAAACCTTTGCG 310 Query 305 CGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340 ||||| ||| || ||||||||||| ||||| || Sbjct 311 TGCGTATGGGTCCGGTTCGGCATCGGCGACGCCCTC 346 >seq15282 Length=926 Score = 161 bits (178), Expect = 2e-37 Identities = 217/298 (73%), Gaps = 3/298 (1%) Strand=Plus/Plus Query 5 TTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATGGTG 64 || |||||||| || || |||| || | ||||||||| ||| | |||||||||||| Sbjct 541 TTCAGCTTGCTGGCGACGGGCAGGAAGAACAGGTTGGCCGAGGCGATGCCGTAGATGGTC 600 Query 65 GCGACAAACGCCACGGCAATGCCGCTGCCCAG-TTGCGAAGGGTCGGCGAGGTTGCCCAT 123 ||| |||||| |||| |||||| |||||| |||| |||||||||||||| ||| Sbjct 601 GCGGTGAACGCCGCGGCGATGCCGTGGCCCAGCTTGC-TGGGGTCGGCGAGGTTCTTCAT 659 Query 124 CACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCAT 183 ||| ||||||||| | ||| || ||||||||||| | || ||||||||| |||||| Sbjct 660 CACCGCGATCAGGCCGAACACGGCGCCGATGATGCCCAGCGTGGGCGCGTAGATGCCCAT 719 Query 184 GCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCACTT 243 || || || ||||||||| || || || ||||| || || || || | | Sbjct 720 CGCCTCGAACACCTTGGCGGCGGCGAGGTCCTGGTGTTCCT-GGCCGTTGAGGTCGATCT 778 Query 244 CCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTTT 301 || | ||| |||| ||||||||| |||| || ||||||| |||||||| || Sbjct 779 CCATCATGTGGCGGATCGATTCCGGCTCCACGCCATCGACCAGCATCTGCAGGCCCTT 836 >seq8456 Length=1698 Score = 152 bits (168), Expect = 1e-34 Identities = 220/304 (72%), Gaps = 5/304 (2%) Strand=Plus/Minus Query 4 CTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATGGT 63 |||||||||| || | ||||| |||| ||||||||| ||| | ||||||||| || Sbjct 683 CTTGAGCTTGGCGGCGATCGGCAGGAACAGCAGGTTGGCCGAGGCGATGCCGTAGATCGT 624 Query 64 GGCGACAAACGCCACGGCAATGCCGCTGCCCAG-TTGCGAAGGGTCGGCGAGGTTGCCCA 122 |||| ||||| |||| |||||| ||| || |||| ||||| || || || || Sbjct 623 GGCGGTGAACGCGGCGGCGATGCCGTGGCCGAGCTTGCTC-GGGTCAGCCAGATTCTTCA 565 Query 123 TCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCA 182 |||| ||||||||| | ||| || ||||||||||||| ||| || |||||| ||||| Sbjct 564 TCACCGCGATCAGGCCGAGCACGGCGCCGATGATGCCGAGGGTGGGGGCGTAGATGCCCA 505 Query 183 TGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCACT 242 | || || || |||||| || || || ||||||| | | | || | | Sbjct 504 TCGCCTCGAACACCTTGGCGCCGGCCTGGTCCTGGTGTTCCTGGCT-GCCCAGTTCGATT 446 Query 243 TCCCGAAGTCTG-CGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTTT 301 ||| | | | || || |||| ||| |||||| | |||||||||||||| |||||||| || Sbjct 445 TCCAGCA-TGTGCCGCATCGATTCGGGCTCGACACCGTCCACCAGCAGCTGCAGGCCCTT 387 Query 302 GCGC 305 |||| Sbjct 386 GCGC 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988448590368