Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq14004 190 4e-46 seq25714 161 2e-37 seq16614 127 4e-27 seq20578 122 2e-25 seq3326 116 7e-24 seq16444 109 1e-21 seq15072 95.1 2e-17 seq35435 73.4 8e-11 seq29971 73.4 8e-11 >seq14004 Length=1018 Score = 190 bits (210), Expect = 4e-46 Identities = 227/306 (74%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||| || | |||||| |||||| || ||||||||||||||||| Sbjct 349 GGCATGGCTGGTTCAGACTTCCGTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 290 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| ||||| | || |||||||| | ||| || Sbjct 289 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCTCAGATCCCCTAGTCAT 230 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||||| ||| | | ||||||| ||||| ||| |||||||||| Sbjct 229 CGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACGCATGCCCATCTTTAT 170 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 | |||||| |||| ||| | || |||| ||||| ||| ||||||||||||| | | Sbjct 169 CCCATAAATGTTTGATCATTGGATAATGCTATCCTGTGATTTTATGCGGTATTA--ATCC 112 Query 241 G--TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 | |||| | ||| || || ||||| ||||||| ||| ||||| ||||||| | Sbjct 111 GGATTTCTCCGGGCTATCCCCCTGATAAAGGTAGGTTGCATACGCGTTACGCACCCGTGC 52 Query 299 GCCACT 304 |||||| Sbjct 51 GCCACT 46 >seq25714 Length=474 Score = 161 bits (178), Expect = 2e-37 Identities = 146/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| || |||||||||| ||||||||||| | ||| | | ||||||||| ||||||| Sbjct 239 GGCGTTGCACCATCAGGGTTGCCCCCATTGTGAATTATTCTCGACTGCTGCCACCCGTAG 298 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 | |||||| |||||||||||| ||| |||| | | || |||||||| || | |||| | Sbjct 299 GTGTCTGGACCGTGTCTCAGTTCCAGTGTGCCTGATCGTCCTCTCAGACCAGGTACCCGT 358 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||| | ||||||| || ||| ||||||||| | || || || ||||| || ||| |||| Sbjct 359 CGTAGCCTTGGTGAGCCGTTACCTCACCAACAAGCTGATAGGGCGCGAACCAATCCTTCA 418 Query 181 GCGA 184 |||| Sbjct 419 GCGA 422 >seq16614 Length=840 Score = 127 bits (140), Expect = 4e-27 Identities = 154/212 (73%), Gaps = 17/212 (8%) Strand=Plus/Plus Query 96 TCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACC 155 ||| |||||||| || |||| |||||||| |||||||||| ||| | ||||||||| | Sbjct 3 TCATCCTCTCAGACCAGCTAAGGATCGTCGCCTTGGTGGGCCTTTACCCCACCAACTAGC 62 Query 156 TAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCT 215 ||||| |||| || |||| || ||||||||||||||| || | Sbjct 63 TAATCCTACGCGGGCTCATCCTTGGGCGATAAATCTTTGG----------------TCTT 106 Query 216 CTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTT 275 ||||| || |||||||||| || |||| || |||||||| | || ||||| || Sbjct 107 ACGACATCATCCGGTATTAGCAGTCATTTCTAACTGTTATTCCGAACCCAAGGGCAGATT 166 Query 276 GCTCACGTGTTACTCACCCGTCCGCCACTAAG 307 | |||| ||||| ||||||| |||||||||| Sbjct 167 -CCCACGCGTTACGCACCCGTGCGCCACTAAG 197 >seq20578 Length=651 Score = 122 bits (134), Expect = 2e-25 Identities = 177/247 (72%), Gaps = 21/247 (9%) Strand=Plus/Plus Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| |||| | | ||| |||||||| || | ||| |||||||| Sbjct 1 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACAGATCGTCGC 60 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 ||||||| || ||| | ||||||||| |||||| | | | || ||||| ||||| | Sbjct 61 CTTGGTGAGCCTTTACCCCACCAACTAGCTAATCTGACATGGGCTCATCTGATAGCGAGA 120 Query 187 AATCTTTGGTCAAAGAATGATGCCATCCTCT---------GACATTATGCGGTATTAGCG 237 |||| ||| ||| || ||| | ||| ||||||||||||||| Sbjct 121 -------GGTC--CGAA-GATCCCCCCCTTTCCCCCGTAGGAC-GTATGCGGTATTAGCG 169 Query 238 TTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTC 297 ||| |||| ||||||| | || | || |||||| || | || || |||||||||||| Sbjct 170 TTCCTTTCGAAACGTTGTCCCCCACTACCAGGCAGATT-CCCATGTATTACTCACCCGTT 228 Query 298 CGCCACT 304 |||| || Sbjct 229 CGCCGCT 235 >seq3326 Length=3886 Score = 116 bits (128), Expect = 7e-24 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || |||||||||||||| | ||| | Sbjct 2330 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTTT 2272 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||||||||||| | ||| || ||| || |||| ||| | || Sbjct 2271 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGG 2212 Query 127 CTTGGTGGGCTATTATCTCACCAACTA-CCTAATCGGCCGCGAGCCCATCTTTCAGCGAT 185 |||||| | || ||| |||||||| ||||||| ||| | | ||||||| | || | Sbjct 2211 CTTGGTAGTCTTTTAAACGACCAACTACCCTAATCTTGCGCAAACTCATCTTTTAACGTT 2152 Query 186 AAA 188 ||| Sbjct 2151 AAA 2149 >seq16444 Length=849 Score = 109 bits (120), Expect = 1e-21 Identities = 180/254 (71%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 57 GTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116 |||||||||||| |||||||||||| ||| ||||| | | |||||||| | ||| Sbjct 1 GTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAG 60 Query 117 CGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCT 176 ||||||| |||||||||| ||| | ||||||||| ||||| |||||||||||| Sbjct 61 ACATCGTCGCCTTGGTGGGCCGTTACCCCACCAACTAGCTAATGTCACGCGAGCCCATCC 120 Query 177 TTCAGCGATAAATCTTTGGTCAAAGAAT-GATGCCA---TCCTCTGACATTATGCGGTAT 232 | | |||||| ||| ||| | | |||| | | | || ||||||||| | Sbjct 121 ATATCCTATAAATATTT-AACAACGCCTCCATGCGAAGGTGATGTG---TTATGCGGTCT 176 Query 233 TAGCGTTCG--TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTC 290 || | || |||| | ||| || || | ||||||||||||||| ||||| | Sbjct 177 TA--ATCCGGATTTCTCCGGGCTATCCCCCTGATATGGGCAGGTTGCTCACGCGTTACGC 234 Query 291 ACCCGTCCGCCACT 304 |||||| ||||||| Sbjct 235 ACCCGTGCGCCACT 248 >seq15072 Length=938 Score = 95.1 bits (104), Expect = 2e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 87 TGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCA 146 |||||| | ||| |||||||| || |||| |||||||| |||||| ||| ||| | || Sbjct 1 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 60 Query 147 CCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTT 193 ||||||| |||||| |||| ||| ||| ||| |||||||||||| Sbjct 61 CCAACTAGCTAATCCAACGCGGGCCAATCCTTCCCCGATAAATCTTT 107 >seq35435 Length=631 Score = 73.4 bits (80), Expect = 8e-11 Identities = 68/85 (80%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282 |||||||||||||| ||| |||| ||| ||| | || | || | |||||| || || | | Sbjct 57 TATGCGGTATTAGCATTCCTTTCGAAATGTTGTCCCCCACTAATAGGCAGATTCCT-AAG 115 Query 283 TGTTACTCACCCGTCCGCCACTAAG 307 ||||||||||||||||| ||||| Sbjct 116 CATTACTCACCCGTCCGCCGCTAAG 140 >seq29971 Length=359 Score = 73.4 bits (80), Expect = 8e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282 |||||||||||||||| ||||||| | |||||| || | || |||||| || || | | Sbjct 335 TATGCGGTATTAGCGTCCGTTTCCGAGCGTTATCCCCCACTACCAGGCAGATTCCT-AGG 277 Query 283 TGTTACTCACCCGTCCGCCACT 304 ||||||||||||||||| || Sbjct 276 CATTACTCACCCGTCCGCCGCT 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998045178624