Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001435.1 Length=587 Score E Sequences producing significant alignments: (Bits) Value seq16020 385 2e-104 seq2455 271 3e-70 seq31061 136 1e-29 seq508 129 2e-27 >seq16020 Length=875 Score = 385 bits (426), Expect = 2e-104 Identities = 355/445 (80%), Gaps = 7/445 (2%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 || ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| || Sbjct 155 TCCATGTACGGCGGCGGTTTCGCCACCGTTCCGGCATACCTGGCCGACCTGTTCGGCACC 214 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 |||||||| || || |||||||||||||||||||| |||||||| || ||||| || Sbjct 215 CAGATGGTTGGCGCCATCCACGGTCGCCTGCTGACTGCCTGGGCCTTCGCTGGCGTGCTG 274 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180 || ||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 275 GGTCCGGTACTGGTGAACTACCTGCGTGAGTATCAGCTGAGCATCGGCGTCGAACGCGCT 334 Query 181 GCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGC 240 || || || ||||||||| |||| |||||||| ||||||||||||||||| ||||||||| Sbjct 335 GCCGCTTACGACATCACCCTGTATATCCTCGCCGGCCTGCTGGTGCTGGGCTTCATCTGC 394 Query 241 AACCTGCTGGTGCGTCCGGTGGCCGACAAGTACTTCATGACCGACGCCGAACTGGCCGCC 300 ||||||||||| || |||||| | |||||||||||||| ||||| |||||||||||| Sbjct 395 AACCTGCTGGTTCGCCCGGTGAACCCGAAGTACTTCATGACTGACGCAGAACTGGCCGCC 454 Query 301 GAGCAAGCGCTGGGGCATGACAAAGGC--GCCGACGCCAGCACGTCCCTGGAGTGGAAAG 358 |||| || | || || ||| | |||| | | || || ||||| ||| | Sbjct 455 GAGCGTGCTCATGG---CGAGAAATCCAAGCCGTCCGCTGC-CG-AGCTGGAATGGGCTG 509 Query 359 CCGCGCCAGGTACTGTGCCATTGGCGATTGCCGCCTGGCTGGTGGTGGGTATTCCGTTGG 418 ||| || | ||| ||| ||| || |||||||||| |||||| | ||| ||| Sbjct 510 CCGATCCGTCGAGCAAGCCGCTGGTGATCGCTGCCTGGCTGGCCGTGGGTCTGCCGCTGG 569 Query 419 CGTGGGGTGTGTGGGTGACCCTGCA 443 | |||||||| ||| | |||||||| Sbjct 570 CCTGGGGTGTTTGGATCACCCTGCA 594 >seq2455 Length=4988 Score = 271 bits (300), Expect = 3e-70 Identities = 261/332 (79%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||||||||| || || |||||||| ||||| |||||||||||||||||||| ||| Sbjct 4446 TCGATGTACGGCGGCGGCTTCGCCACGGTGCCGGCCTACCTGGCCGACCTGTTCGGCACG 4505 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 |||| || || || |||||||| ||||||||||| |||||||| |||||||| | || Sbjct 4506 CAGAACGTGGGCGCCATCCACGGCCGCCTGCTGACGGCCTGGGCCACGGCGGGCATTCTG 4565 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180 ||||||||| |||||||||| |||| || || ||| || || | ||| | |||| Sbjct 4566 GGCCCGGTGGTGGTGAACTACATGCGCGACTACCAGCTGGGCCTGGGCATCCCGCGCGAG 4625 Query 181 GCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGC 240 || || || || |||||||||| | ||| |||||| |||| | ||| | Sbjct 4626 CAGGTGTACAACCAGACGATGTACATCCTGGTGGGCATGCTGGCCGTGGGCCTGATCGCC 4685 Query 241 AACCTGCTGGTGCGTCCGGTGGCCGACAAGTACTTCATGACCGACGCCGAACTGGCCGCC 300 |||||||||||||| || |||||||||||| | ||||||||||||||||| ||||||| Sbjct 4686 AACCTGCTGGTGCGCCCCGTGGCCGACAAGCATTTCATGACCGACGCCGAGCTGGCCGAA 4745 Query 301 GAGCAAGCG-CTGGGGCATGACAAAGGCGCCG 331 ||| ||||| |||| ||| ||||| | ||||| Sbjct 4746 GAG-AAGCGCCTGGCGCACGACAAGGCCGCCG 4776 >seq31061 Length=331 Score = 136 bits (150), Expect = 1e-29 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 59 CGCAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCT 118 ||||| | || || || |||||||| |||||||| ||||||||||| |||| ||| || Sbjct 6 CGCAGTTCGTGGGCGCCATCCACGGCCGCCTGCTCACCGCCTGGGCCACGGCCGGCATCC 65 Query 119 TGGGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCG 178 | ||||| ||| |||| ||||| |||| || || || || || | ||| | |||| Sbjct 66 TTGGCCCCGTGGTGGTCAACTACATGCGCGAATACCAACTGGGCCTGGGCCTGCCGCGCG 125 Query 179 CTGCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCT 238 || || || ||| |||||||||| | ||| || |||| | || | || Sbjct 126 AACAGGTGTACAACCAGACCATGTACATCCTGGTGGGCATGTTGGTCATCGGCCTGATTG 185 Query 239 GCAACCTGCTGGTGCGTCCGGTGGCCGACAAGTACTTCATGACCGACGCCGAACTGGC 296 ||||||| ||||||||||| |||| ||||||| ||||||| ||||| |||||||| Sbjct 186 CCAACCTGATGGTGCGTCCGCTGGCTGACAAGTGGTTCATGAGCGACGAGGAACTGGC 243 >seq508 Length=15199 Score = 129 bits (142), Expect = 2e-27 Identities = 223/324 (69%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 || ||||| |||||||||||| | || || || ||||| ||||| ||| | ||||||||| Sbjct 679 TCCATGTATGGCGGTGGTTTTTCTACTGTACCTGCTTATCTGGCAGACATTTTCGGTACG 738 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 || ||||| || || || || || ||| |||| || || ||| | | || || || ||| Sbjct 739 CAAATGGTTGGCGCAATTCATGGACGCTTGCTCACAGCATGGTCTGTCGCAGGTGTATTG 798 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180 || || ||||| | | | || | ||||| ||||||||| | || || | | || Sbjct 799 GGAACGTTGTTGATCACCAATATTCGTGATTATCAGTTGGCCCATGGGGTAGCTCAGGCG 858 Query 181 GCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGC 240 | |||||||| ||| ||||||| || || ||| || ||| | || || | | Sbjct 859 CAATCTTATGACATTACCATGTACATTCTGGCAGGCATGTTGGCAATTGGCTTTGTGCTC 918 Query 241 AACCTGCTGGTGCGTCCGGTGGCCGACAAGTACTTCATGACCGACGCCGAACTGGCCGCC 300 || ||||| | || || | || | | | ||||| || || ||||| ||||| Sbjct 919 AATTTGCTGATTAAACCCGTAGATGATGATAAATATATGACTGATGCTGAACTAGCCGCA 978 Query 301 GAGCAAGCGCTGGGGCATGACAAA 324 || ||||| ||| |||||| ||| Sbjct 979 GAAAAAGCGTTGGCGCATGAAAAA 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1775368827360