Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001436.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq32751 179 4e-43 seq8535 93.3 5e-17 seq9149 80.6 3e-13 seq11638 75.2 1e-11 >seq32751 Length=288 Score = 179 bits (198), Expect = 4e-43 Identities = 137/162 (85%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 37 TGTTGATCGCCAGCTCCGCCAGGGCCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGC 96 || |||||||||| || ||||| | |||| | || || || | ||||||||||||| Sbjct 1 TGCTGATCGCCAGTTCGGCCAGCTGCTGGCCGAACTCGGGGTGGGCATTGAGCCACAGGC 60 Query 97 TGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCT 156 ||||||| |||||||||||||| ||||| |||||||| ||||| ||||| |||||||||| Sbjct 61 TGAAGGCATCCTTGACCACGCCGGAGACGAACGCCGCCGCCTCACGGGAGGACAGGCGCT 120 Query 157 CCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198 ||||||||||||||||||| || | |||||||||||||||| Sbjct 121 CCTTGGTCTGCCCGGAGAACTGGGCATCCTGCATCTTCATCG 162 >seq8535 Length=1682 Score = 93.3 bits (102), Expect = 5e-17 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 65 GCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGAC 124 |||||||||| | || ||| ||| ||||||||||||||| | | | |||| ||| Sbjct 1448 GCCCAGTTCCACGTTCTGGTTCAGCAGCAGGCTGAAGGCGTCGTGGGCGGCGCCCTCGAC 1389 Query 125 AAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTC 184 ||| | || |||| ||| || |||||||| ||||||||||| ||| ||| ||||| || Sbjct 1388 AAAGCCGGCCGCCTGGCGCGAGGACAGGCGTTCCTTGGTCTGGCCGCTGAACTGCGGGTC 1329 Query 185 CTGCATCTTCATCG 198 |||||||| || Sbjct 1328 GGTCATCTTCAGCG 1315 >seq9149 Length=1572 Score = 80.6 bits (88), Expect = 3e-13 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 65 GCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGAC 124 |||||| ||| | || ||| ||| |||||||||| || || | | |||| ||| Sbjct 372 GCCCAGCTCCACGTTCTGGTTCAGCAACAGGCTGAACGCATCGTGCGCGGCGCCCTCGAC 431 Query 125 AAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTC 184 ||| | || |||| ||| || |||||||| ||||||||||| ||| ||| ||||| || Sbjct 432 AAAGCCGGCCGCCTGGCGCGAGGACAGGCGTTCCTTGGTCTGGCCGCTGAACTGCGGGTC 491 Query 185 CTGCATCTTCATCG 198 |||||||| || Sbjct 492 GGTCATCTTCAGCG 505 >seq11638 Length=1235 Score = 75.2 bits (82), Expect = 1e-11 Identities = 97/134 (72%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 65 GCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGAC 124 |||||| ||| | || ||| ||| |||||||||| || || | | |||| || Sbjct 144 GCCCAGCTCCACGTTCTGGTTCAGCAACAGGCTGAACGCATCGTGCGCGGCGCCCTCTAC 85 Query 125 AAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTC 184 ||| | || |||| ||| || |||||||| ||||||||||| ||| ||| ||||| || Sbjct 84 AAAGCCGGCGGCCTGGCGCGAGGACAGGCGTTCCTTGGTCTGGCCGCTGAACTGCGGGTC 25 Query 185 CTGCATCTTCATCG 198 |||||||| || Sbjct 24 GGTCATCTTCAGCG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534216014597