Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq5565 401 1e-109 seq11365 331 2e-88 seq23069 197 3e-48 seq28462 179 9e-43 seq1996 152 1e-34 seq24454 89.7 1e-15 >seq5565 Length=2488 Score = 401 bits (444), Expect = 1e-109 Identities = 326/395 (83%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2391 CGACGGCACGGGCCCGGTGTGGAAGGGTACCCTGTTCCCGTTCCTGTTCATCACCATTGC 2332 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 |||||| ||||| || || ||||| |||||||| |||||||| ||||| |||||| |||| Sbjct 2331 CTGTGGTGCGGTGTCCGGCTTCCACGCGCTGATTTCCTCGGGGACCACCCCCAAGCTGCT 2272 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 | | || | | | ||||| || ||||| |||||||||||||||||||| |||||||| Sbjct 2271 GGATAACGAAACCAACGCCCGCTATATCGGCTACGGCGGCATGCTGATGGAATCGTTCGT 2212 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 ||||||||||| |||||||| ||||||||||| || || |||||||||||||||||||| Sbjct 2211 CGCCATCATGGCCATGGTTGCGGCCTCGGTGATCGAACCGGGCGTGTACTTCGCCATGAA 2152 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 ||||||||| || | ||||| ||||| || | | |||||||| |||||||||||||| Sbjct 2151 CAGCCCGGCGGCAGTAGTCGGTACCGATGTCGCGTCGGTGGCGCAGACCGTCAGCAGTTG 2092 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360 |||||| ||||| || ||| ||| |||||||||| | ||||| || ||| Sbjct 2091 GGGCTTCCTGATTACACCCGAGCAGCTCGAAGCCGTTGCCCGTGACATCGGCGAGCACAC 2032 Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 ||||||||| ||||||||||| ||||| || |||| Sbjct 2031 CATCCTGGCCCGTGCCGGCGGTGCGCCAACCCTGG 1997 >seq11365 Length=1263 Score = 331 bits (366), Expect = 2e-88 Identities = 315/398 (79%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1194 CGACGGCACGGGCCCGGTGTGGAAGGGTACCCTGTTCCCGTTCCTGTTCATCACCATTGC 1135 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 |||||| ||||| || || ||||| |||||||| |||||||| ||||| |||||| |||| Sbjct 1134 CTGTGGTGCGGTGTCCGGCTTCCACGCGCTGATTTCCTCGGGGACCACCCCCAAGCTGCT 1075 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 | | || | | | ||||| || ||||| |||||||||||||||||||| |||||||| Sbjct 1074 GGATAACGAAACCAACGCCCGCTATATCGGCTACGGCGGCATGCTGATGGAATCGTTCGT 1015 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 |||||||||||| |||| || || ||| | || ||||| || ||||||||||||||||| Sbjct 1014 CGCCATCATGGCGCTGGTCGCGGCTTCGATCATCGAGCCGGGTGTGTACTTCGCCATGAA 955 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGC-GCAAACCGTCAGCAGTT 299 |||||| || ||| |||||||| || |||| |||||| || || |||||||| | Sbjct 954 CAGCCCCGCCGCCGCCATCGGCACCAGCGCGGTCGACGTGGCTGCGAA-GGTCAGCAGCT 896 Query 300 GGGGCTTTGCCATTACGCCTGAGGCGCTGTCG--GCCGTTGCCCACAATATCGGTGAAAC 357 ||||||| | | ||||| || ||| || | || || ||||| ||||| |||| Sbjct 895 GGGGCTTCGTGGTGACGCCGGAAATGCTCACGCAGACG--GCGCACAACATCGGCGAAAG 838 Query 358 CACCATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 ||| ||| | | || ||||| || || ||||| |||| Sbjct 837 CACGATCATCTCGCGCGCCGGTGGTGCACCGACGCTGG 800 >seq23069 Length=558 Score = 197 bits (218), Expect = 3e-48 Identities = 195/252 (77%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 2 GACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCC 61 ||||| ||||| | ||||||| |||| ||||||||||||||||| || ||||| ||| Sbjct 112 GACGGTACCGGTCCACTGTGGAAAGGCGCGCTGTTCCCGTTCCTGTTTATTACCATCGCC 171 Query 62 TGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTC 121 |||||||| || || || |||||||| ||||| | || ||||||||||| ||| |||| Sbjct 172 TGTGGCGCAGTGTCTGGCTTCCATGCCCTGATTGCTTCCGGCACCACGCCGAAGCTGCTG 231 Query 122 GCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTG 181 || | || | | | || || |||||||| |||| |||||||||||||| |||||| Sbjct 232 GCGAACGAAAACGACGCTCGCCTGATCGGTTATGGCGCAATGCTGATGGAGTCCTTCGTG 291 Query 182 GCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 || |||||||| |||| || || || | || ||||| || | |||||||| |||||| Sbjct 292 GCGATCATGGCCCTGGTGGCAGCGTCCATCATCGAGCCGGGTCTCTACTTCGCGATGAAC 351 Query 242 AGCCCGGCTGCC 253 | |||| | ||| Sbjct 352 ACCCCGCCAGCC 363 >seq28462 Length=398 Score = 179 bits (198), Expect = 9e-43 Identities = 226/306 (74%), Gaps = 7/306 (2%) Strand=Plus/Minus Query 95 TCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGA-GAGC-CATGCCCGTTACATCGGTT 152 ||||| ||||||||||| ||| |||| |||| ||| | || ||||| | |||||||| | Sbjct 398 TCCTCCGGCACCACGCCGAAGCTGCTGGCCAATGAAGCGCACATGCGC--TACATCGGCT 341 Query 153 ACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCATGGCGATGGTTGCCGCCTCGGTGA 212 ||||||||||||||||||| ||||||||||| | |||||| |||| || |||||| | | Sbjct 340 ACGGCGGCATGCTGATGGAATCGTTCGTGGCGGTGATGGCGCTGGTGGCGGCCTCGATCA 281 Query 213 TTGAGCCCGGCGTGTACTTCGCCATGAACAGCCCGGCTGCCATTGTCGGCACCGACGTGG 272 | || || ||| | |||||||| |||||||||||||| || | |||| |||| | || Sbjct 280 TCGATCCGGGCATCTACTTCGCGATGAACAGCCCGGCGGCGGTGATCGGTGCCGATGCGG 221 Query 273 TCACCGTGGCGC---AAACCGTCAGCAGTTGGGGCTTTGCCATTACGCCTGAGGCGCTGT 329 | | | ||||| | | | || || |||||||| |||| ||||| ||| || Sbjct 220 CCTCGGCGGCGCACTACATCACCAACACCTGGGGCTTCACCATCACGCCCGAGCAATTGA 161 Query 330 CGGCCGTTGCCCACAATATCGGTGAAACCACCATCCTGGCACGTGCCGGCGGCGCGCCGA 389 | || || ||||||||| | ||||||||| ||||| || || ||||||| Sbjct 160 CCGCGACCGCGGCGGCGATCGGTGAACCGACCATCCTGCATCGTGCAGGTGGTGCGCCGA 101 Query 390 CTCTGG 395 | |||| Sbjct 100 CCCTGG 95 >seq1996 Length=5798 Score = 152 bits (168), Expect = 1e-34 Identities = 105/119 (88%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 11 GGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCG 70 ||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||| || ||| Sbjct 134 GGCCCGGTGTGGAAGGGCGGCATGTTCCCGTTCCTGTTCATTACCATCGCCTGCGGTGCG 75 Query 71 GTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGA 129 ||||| |||||||| |||||||| ||||| ||||||||||| ||| |||| |||| ||| Sbjct 74 GTCTCCGGTTTCCACGCGCTGATTTCCTCCGGCACCACGCCGAAGCTGCTGGCCAATGA 16 >seq24454 Length=513 Score = 89.7 bits (98), Expect = 1e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 4 CGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCCTG 63 |||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 447 CGGCGACGGTCCGGTCTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATCGCCTG 506 Query 64 TGGCGCG 70 |||||| Sbjct 507 CGGCGCG 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161187178976