Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001589.1 Length=431 Score E Sequences producing significant alignments: (Bits) Value seq25173 233 5e-59 seq13006 228 2e-57 >seq25173 Length=490 Score = 233 bits (258), Expect = 5e-59 Identities = 246/324 (76%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 108 GCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGG 167 |||||||| || || | || ||||||||||| ||| ||||| |||||||| |||| Sbjct 404 GCTGATGCCGCTCGGTGTACGTATTTTCCTGGTCTATTTCCTGTTCGTCGGCCTGTCCGG 345 Query 168 CTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGA 227 || |||||||| | ||| || ||| | ||||||||||| ||||||||||| ||||| || Sbjct 344 CTGGTTCGTGCTGAGCACGGTAATGGACGAAATCCGCCCGGGCGTGCGCCAGTCCACTGA 285 Query 228 AGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAA 287 ||||| |||| |||||||| |||||||||| | | ||||||| || || | Sbjct 284 GGAAACCCTGGTCGACACCGCACACCTGCTGGCGGTGCTGCTGCGTGAGGATGTACGCGA 225 Query 288 CGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAGCC 347 || ||||| |||| | || ||||||||||||||||| || ||| ||||| || Sbjct 224 AGGTCGCCTCGCCCAGGGGCAACTACCCGAATTGCTCAAGGCCTACGGCCAGCGCCAACC 165 Query 348 GGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGA 407 || ||| |||||||||| || |||| |||||||||||||| |||||||| || ||||| Sbjct 164 CGGCGCGCAGATCTGGGGCGTGGCGAAGAACCAGGTCAACCACCGCATCTATGTCACCGA 105 Query 408 CGCCAAGGGCAGGGTATTGCTCGA 431 |||| | || | || ||||||| Sbjct 104 CGCCGACGGTATCGTGCTGCTCGA 81 >seq13006 Length=1102 Score = 228 bits (252), Expect = 2e-57 Identities = 279/385 (72%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 44 GCGGCGGATGCCGAGCCGATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNN 103 |||| |||||||||||||||||||||||||||||||| Sbjct 1101 GCGGGTGATGCCGAGCCGATCCAGACCCATCGCGGCCTCGGTTACAGCTATAGCCCGGAG 1042 Query 104 NNCAGCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGA 163 | ||||||||| | || | || || ||||||||||| ||||| |||| || Sbjct 1041 CACGCCTGATGCGCTTGGGTATCCGCATCTTCCTGGTGTACTTCCTGTTCGTCGGTTTGG 982 Query 164 CCGGCTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCA 223 |||| |||||| ||||||| ||||| | | || ||||| | ||||||||||| Sbjct 981 CCGGTTACTTCTTGCTCAATACCGTACGCGAACAGATTCGCCCGGTAGTGCGCCAATCGT 922 Query 224 CCGAAGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTA 283 |||||||||||||||| ||||| |||||||||||||| ||||||||| | | ||||| | Sbjct 921 CCGAAGAAACATTGGTAGACACTGCCAACCTGCTGGCAGAAATCCTGAGGGATGACGTCA 862 Query 284 AAAACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGC- 342 | ||||||||| |||| ||| |||||| ||||| |||| || || |||| Sbjct 861 AGGCCGGCACCCTGAACCAGGGCCGCCTGCCCGAGGTGCTCGAGGCCTACGGA--TCGCG 804 Query 343 CAGCC-GGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGT 401 ||||| ||| || ||||||||| || | || |||||||||| ||| ||||||||||| Sbjct 803 CAGCCCGGGTGCACAGATCTGGGGGTTGGCCAAGAACCAGGTCAGCCACCGCATCTACGT 744 Query 402 GACCGACGCCAAGGGCAGGGTATTG 426 || ||||||||||||| || ||| Sbjct 743 CACTGACGCCAAGGGCATCGTGTTG 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1276346238048