Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq22622 154 2e-35 seq15772 129 7e-28 seq28495 89.7 6e-16 seq10657 78.8 1e-12 >seq22622 Length=574 Score = 154 bits (170), Expect = 2e-35 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 273 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTTATTATTCCATGCTAATGTATTCG 214 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 213 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 154 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | ||| |||| ||||| || ||| || | ||| | || |||| | ||| Sbjct 153 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 94 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 93 GTGAGGCGGACC 82 >seq15772 Length=893 Score = 129 bits (142), Expect = 7e-28 Identities = 83/91 (91%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 802 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 861 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTT 96 || | |||||||||||||||||||||||| Sbjct 862 AGCAAAGGCCTGCTTTGAACACTCTAATTTT 892 >seq28495 Length=397 Score = 89.7 bits (98), Expect = 6e-16 Identities = 99/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| | || |||||| ||||||||||||||||||||| | || || Sbjct 145 CCAACACAATAGGACCAGAC-TCCTATCACGTTATTCCATGCTAATGTATTCAGAGCATA 203 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA-CCA 130 ||| |||||||| |||||||||||| |||| |||| || | || || | | || ||| Sbjct 204 AGCTTGCTTTGAGCACTCTAATTTTTTCAAAGTAACAGCGCCGGAGCCGCGACCCAGCCA 263 Query 131 ATGAAGGC 138 || ||||| Sbjct 264 ATTAAGGC 271 >seq10657 Length=1350 Score = 78.8 bits (86), Expect = 1e-12 Identities = 81/104 (78%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 4 CTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATT 63 ||| ||||||||||||| |||| | ||||||||| |||||||||||||| |||| Sbjct 114 CTCGAGAAACCAACAAA-TAGGTCA--AAGTCCTATTCCATTATTCCATGCTACAGTATC 170 Query 64 CGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | || |||||| | |||||||||||||| |||| ||||| Sbjct 171 CAAGCAATTGCCTGCCTGAAACACTCTAATTTTTTCAAAGTAAA 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594995082126