Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001645.1 Length=355 Score E Sequences producing significant alignments: (Bits) Value seq4760 159 7e-37 seq13266 158 2e-36 seq31661 154 3e-35 seq9526 93.3 9e-17 >seq4760 Length=2840 Score = 159 bits (176), Expect = 7e-37 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 71 GCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGCGCAT 130 ||||||| | ||||||||| ||||||||| ||||||||||||| || || |||||||| Sbjct 1966 GCCGCCGGTGCTGGCGGTGAAGCTGCAGGAACTGTTCGGCCTGGCCGATACGCCGCGCAT 1907 Query 131 TGCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCC-GTCGCGCAGGCCGGTGC 189 |||| || ||| | | | | |||||||||| ||||| | || || | ||| ||| Sbjct 1906 CGCCGATGGCCGCGTGCCGCTGACCCTGCACCTGCTCTCCCCCGGCG-GCCGCCCGCTGC 1848 Query 190 AGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAGAAGGATC 249 |||| |||||||||||| ||||||||| | ||||||||||| || || ||||| Sbjct 1847 AGGTCACCCAGGATCTGCGCAACTTCTGGGAGAACACCTACGCCGAAGTAAAAAAGGAAA 1788 Query 250 TGAAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCC 299 ||||||| || || ||| ||| |||||||||||||||| | |||| Sbjct 1787 TGAAGGGCCGCTACCCGCGCCATCCGTGGCCGGATGATCCGTGGACGGCC 1738 >seq13266 Length=1077 Score = 158 bits (174), Expect = 2e-36 Identities = 128/155 (83%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 156 TTGCACCTGCTGTCCCCGTCGCGCAGGCCGGTGCAGGTGACCCAGGATCTGGCGAACTTC 215 ||||| || ||||| || | || ||||| |||||||| ||||||||||| ||||||||| Sbjct 53 TTGCATCTACTGTCTCCTGCTCGTAGGCCAGTGCAGGTCACCCAGGATCTTGCGAACTTC 112 Query 216 TGGCGCAGTACCTACGCCGAGGTGAAGAAGGATCTGAAGGGGCGGTATCCGAAGCATTAT 275 ||||| |||||||| | ||||||||||||||| ||||||| | || || ||||| ||| Sbjct 113 TGGCGTAGTACCTATGTGGAGGTGAAGAAGGATTTGAAGGGTAGATACCCCAAGCACTAT 172 Query 276 TGGCCGGATGATCCGTTGGTGGCCGAAGCGACGGC 310 ||||| || || || |||||||| || |||||||| Sbjct 173 TGGCCTGAAGACCCATTGGTGGCTGAGGCGACGGC 207 >seq31661 Length=316 Score = 154 bits (170), Expect = 3e-35 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 81 CTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGCGCATTGCCGGCGGG 140 ||||||||| |||||||| |||||||||||||| ||||| |||||| | || | ||| Sbjct 1 CTGGCGGTGAAGCTGCAGGAGTTGTTCGGCCTGGCCGACACGCCGCGCGTCGCGGACGGT 60 Query 141 CGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGGCCGGTGCAGGTGACCCAG 200 ||| | | | | |||||||| |||||||| ||| |||| ||||||||||| | Sbjct 61 CGCGTGCCGCTGCTGCTGCACCTGTTGTCCCCGGGCGGCAAGCCGCTGCAGGTGACCTCG 120 Query 201 GATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAGAAGGATCTGAAGGGGCGG 260 || ||| ||||||||| | ||||| |||||||| | |||||| ||||||| || Sbjct 121 GACCTGCGCAACTTCTGGAACTCGACCTATGCCGAGGTCAGGAAGGAGATGAAGGGACGA 180 Query 261 TATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCCGAAGCGACG 308 |||||||||||| ||||| || || |||| | ||| |||| ||| Sbjct 181 TATCCGAAGCATCCGTGGCCCGACGACCCGTGGAGCGCCCAAGCAACG 228 >seq9526 Length=1512 Score = 93.3 bits (102), Expect = 9e-17 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 183 CCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAG 242 ||| ||||||| |||||||||||| ||||||||| || ||||||||||| ||||| Sbjct 1510 CCGCTGCAGGTCACCCAGGATCTGCGCAACTTCTGGGAAAGCACCTACGCCGAAGTGAAA 1451 Query 243 AAGGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGT 291 ||||| ||||||| || || ||| || |||||||||||||||| Sbjct 1450 AAGGAGATGAAGGGCCGTTACCCGCGCCACCCATGGCCGGATGATCCGT 1402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1033232668896