Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq14094 369 9e-100 seq10426 248 2e-63 seq3846 230 5e-58 seq6689 181 2e-43 seq9985 165 2e-38 >seq14094 Length=1012 Score = 369 bits (408), Expect = 9e-100 Identities = 318/394 (81%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| ||| ||||| ||||||||||| ||||| || || |||||||||| | Sbjct 946 CGATGGTCAGCAGCTCACCGCCTACCTGGGTCCAGGCCAGACCTGTCACCTGACCGATCT 887 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 |||||||||| |||||||| ||||||| | ||||||||||| || |||| ||| |||| Sbjct 886 GATCCTGCTGTTCGGCCAGACCGTAGCGGTGCTTGCGCACGCCCAGAAAGTCCTCGAGGG 827 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 | |||||||||||| ||| ||||||||||||| || || | ||| ||||| | Sbjct 826 AATCGGCCGTGACCAGCACGTGGAAGCGTTTTTCCTTGGCGTGCTTCTTCACCGCACGCC 767 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240 |||| | ||| |||||||| |||||||||| || || || || |||||||||||||| | Sbjct 766 GGCACACCTTGGCGATCTGCCGCTCCAGGCTGCGTACGCCTGCCTCGCGGGTGTAGTAAC 707 Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300 | | |||||| ||||||| | | || ||||| | |||| ||||||| || |||| Sbjct 706 GAATGATGTCACGGATCGCCGCTTCCTCGAATTCCAGCTCGGTTTTCTTCAAACCGTTGG 647 Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360 || ||||||||| ||||||||||| ||| ||||||| |||| ||| ||||| ||||||| Sbjct 646 CCTGAATCTGCTTTGGCGCGAGGTATTTGGTGGCGATATTGACCTTTTCGTCCTCGGTGT 587 Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||||||||||||||||| ||||| |||||||| Sbjct 586 AACCCGGCAGGCGAATCACCTCCATGCGGTCCAG 553 >seq10426 Length=1380 Score = 248 bits (274), Expect = 2e-63 Identities = 300/399 (75%), Gaps = 11/399 (3%) Strand=Plus/Plus Query 3 ATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTTGA 62 |||||||||| || |||||||||| |||||| |||| || ||| || || || || Sbjct 716 ATGGTCAGCAGATCACCGCCCACCTCGGTCCATGCCAAACCGACGACTTGCCCCACCTGG 775 Query 63 TCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGGAG 122 | ||||||||| || |||||||| || | ||||||||||| ||| ||| |||| | Sbjct 776 TTCTGCTGCTCCGCACGGCCGTAGGTGTACTTGCGCACGCCCAGGTAGTCGGGCAGGTTG 835 Query 123 TCGGCCGTGACCTTCACC--GAGAAGC-GTTTTTCCAGC-GCATGTTCCTTGACCGCCTT 178 || || || ||| ||| | | | | |||| |||| ||| | |||| ||| |||| Sbjct 836 TCAGCGGTCACCACGACCTGGGGTTCCAGCTTTTTCAGCTGCAGGC-CCTTCACCACCTT 894 Query 179 GCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTA 238 |||||||||||| | | || ||||||||| |||||| ||||| || ||||||||||| Sbjct 895 GCGGCAGATCTTGGACAGCTCGCGCTCCAGCGAACGCACGCCGGCCTCACGGGTGTAGTA 954 Query 239 GCGGACGATGTCGCGGATCGTGCCGACT---TCAAATTCGATCTCGCCCTTCTTCAGGCC 295 ||| || | ||||| | || || |||| | | | | | || | | ||||| ||| Sbjct 955 GCGCACCACATCGCGCA-CG-GCAGACTCGGTGACCTGCAGT-TCCTCGTCCTTCACGCC 1011 Query 296 ATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTC 355 ||| || |||||||||||| |||||||| |||||||||||| ||||||||||||| Sbjct 1012 GTTGTTCGTCATCTGCTTGGGCAGCAGGTACTTCATGGCGATGTTGGTCTTCTCGTCTTC 1071 Query 356 GGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||| |||| |||||| ||||||||||| |||||||| Sbjct 1072 GGTGTAGCCCGACAGGCGGATCACTTCCATGCGGTCCAG 1110 >seq3846 Length=3409 Score = 230 bits (254), Expect = 5e-58 Identities = 293/399 (73%), Gaps = 7/399 (2%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| |||||||| |||| |||||| || || || |||||| |||| | Sbjct 2870 CGATGGTCAGCAGATCGCCGCCGACCTCGGTCCAGGCAAGACCCACGACCTGGCCGATCT 2811 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | | | | | ||||| |||| ||| || | ||||| || || ||| ||| |||| Sbjct 2810 GGTTGTTCAGTTCGGCACGGCCATAGGTGTACTTGCGAACACCCAGGTAGTCAGGCAGGT 2751 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGC----GTTTTTCCAGC-GCATGTTCCTTGACCGC 175 |||||| ||||| || | | || | || | ||| ||| | ||||||| | Sbjct 2750 TGTCGGCAGTGACGACGACGGTGG-GCTCCAGCTTCTTGAGCTGCAGGC-CCTTGACGAC 2693 Query 176 CTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTA 235 ||||||||||||||| | | || ||||||||| |||||| ||||| || || ||||| Sbjct 2692 CTTGCGGCAGATCTTGGACAGCTCGCGCTCCAGCGAACGCACGCCGGCCTCTCGCGTGTA 2633 Query 236 GTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCC 295 |||||| |||||||||||||| | | | || | |||||||| | ||||| || Sbjct 2632 GTAGCGCACGATGTCGCGGATGGCGGATTCCTCCACCCGCATCTCGCCTTCCTTCACACC 2573 Query 296 ATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTC 355 ||| | |||||||||||| ||||| |||||||||||||| ||| ||||| || Sbjct 2572 GTTGTTGGTGATCTGCTTGGGCAGCAGGTAGCGGATGGCGATGTTGACCTTTTCGTCCTC 2513 Query 356 GGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||||||||| |||||| ||||||||||| |||||||| Sbjct 2512 GGTGTAACCCGACAGGCGGATCACTTCCATGCGGTCCAG 2474 >seq6689 Length=2121 Score = 181 bits (200), Expect = 2e-43 Identities = 187/242 (77%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 154 CCAGCGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCAC 213 ||||||| ||||| ||| |||||||||||||||| ||||||| ||| |||||| | Sbjct 706 CCAGCGCGATCTCCTTCACCACCTTGCGGCAGATCTTGGCGATCTCGCGTTCCAGGTTGC 647 Query 214 GCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAAT- 272 |||| || | ||||| ||||||||||| |||||||| |||| | | | ||| | || Sbjct 646 GCACGCCCGACTCGCGCGTGTAGTAGCGCACGATGTCCTGGATGGCGTC-ACTGCCGATC 588 Query 273 TCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATG 332 || | ||| || || |||||| |||||| | |||||||||| | ||||| | || Sbjct 587 TCCAGCTCTTCCGGCTGCAGGCCGTTGGCCTTGACCTGCTTGGGCACCAGGTAACGGGTG 528 Query 333 GCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCC 392 |||||||||| |||||| || |||||||| || || | ||| ||||||||||| |||||| Sbjct 527 GCGATGTTGAGCTTCTCATCCTCGGTGTAGCCGGGGATGCGGATCACTTCCATGCGGTCC 468 Query 393 AG 394 || Sbjct 467 AG 466 >seq9985 Length=1438 Score = 165 bits (182), Expect = 2e-38 Identities = 181/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 154 CCAGCGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCAC 213 ||||||| |||||||| |||| ||||||||||| |||| | |||||| || | Sbjct 766 CCAGCGCGATCTCCTTGACTACCTTCCGGCAGATCTTGGCGACTTCGCGCTCAAGATTGC 707 Query 214 GCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATT 273 |||| |||| |||||| |||||||||||||| | ||||||||||| || | | | || Sbjct 706 GCACGCCGGATTCGCGCGTGTAGTAGCGGACCAGGTCGCGGATCGCGCTTTCGGCGATTT 647 Query 274 CGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGG 333 | |||| | |||||| ||||||||| | ||||| ||| |||| || || Sbjct 646 TCAGCTCGTCGGCCTTCAGTCCATTGGCCTTCAATTGCTTAGGCACGAGATAGCGCTGGG 587 Query 334 CGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCA 393 ||||||||| ||||||||| |||||||| || || | ||| || |||||||| ||||||| Sbjct 586 CGATGTTGACCTTCTCGTCCTCGGTGTAGCCGGGGATGCGGATGACTTCCATGCGGTCCA 527 Query 394 G 394 | Sbjct 526 G 526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157988316224