Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq13039 587 2e-165 seq16239 131 5e-28 seq30954 127 6e-27 seq9859 123 7e-26 seq563 123 7e-26 >seq13039 Length=1099 Score = 587 bits (650), Expect = 2e-165 Identities = 400/450 (89%), Gaps = 0/450 (0%) Strand=Plus/Plus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||||||||||| ||||| || || || || || |||||||| |||||||| |||| Sbjct 192 CGATCAGGAACACTTCGCGGGCGCCAGCACCCAGTGCGGATTCACGAATGGCACGGCGCT 251 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | |||||||| || |||||||| |||||||||||||| || || ||||||||||| | Sbjct 252 CGACCTGGGTCGATTTGCACGGCACGCAGATCAGCACGCGCGGCGAAGGCTGCAGGAAGC 311 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 312 TGTTCTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTTTCGCACACGCTGAAATCGG 371 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 |||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||| Sbjct 372 CGATCACGCCGTCTTTCATCGGGCGGATGGCGGCGATATTGCCTGGCGTACGGCCGAGCA 431 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGG 300 |||||||||| |||||||||||||| || |||||||||||||| |||||||| || |||| Sbjct 432 TGCGCTTGGCGTCGGTGCCGACGGCCACAACACTTTTCTGATTGCCATGGGTACGGATGG 491 Query 301 CCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGG 360 | || ||||| ||||| ||||||||||| ||||||||||| || ||||||||||| |||| Sbjct 492 CGACGACCGACGGCTCGTTCAGGACGATGCCGCGCTCGCGTACATAAATAAGGGTATTGG 551 Query 361 CAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATGG 420 |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct 552 CAGTGCCCAGGTCAATCGACAGATCGCTGGAAAACATGCCACGCAGTTTTTTGAACATGG 611 Query 421 GGAAAGGACCCTAAGCAACGCGTGGGTAAA 450 | | |||||||| |||||||||||||||| Sbjct 612 GATAGGGACCCTAGGCAACGCGTGGGTAAA 641 >seq16239 Length=863 Score = 131 bits (144), Expect = 5e-28 Identities = 239/350 (68%), Gaps = 15/350 (4%) Strand=Plus/Plus Query 57 CGCTCCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGG 116 ||||| ||||||||||| ||| || |||||||| | | || ||||| ||| || Sbjct 1 CGCTCGACCTGGGTGGAGCCGCAGGGCACGCAGATGATGATGCGCGGGCTCGGCGTGAGC 60 Query 117 AAACTGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAG 176 | || ||| ||| | |||||||| | || | ||||| |||| || |||| Sbjct 61 AGCGTGCGCGGGTGCACCATCTTGATGAACTGCTTGATCATCTGCTCGGTGATCACGAAG 120 Query 177 TCGGCGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCG 236 || |||||||| ||||| |||||||| || ||||| | || ||||| || ||| Sbjct 121 TCCGCGATCACACCGTCCTTCATCGGGCGGATGGCTTCGATGTTGCCCGGCACCTTGCCC 180 Query 237 AGCATGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGG----- 291 |||||| |||||| ||| ||||||||| || |||| || || |||| Sbjct 181 AGCATGGCCTTGGCTTCGTGGCCGACGGCCTGGATGACTTTC---TTGCCGTGGGGGCCG 237 Query 292 ---TC----CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACG 344 || || ||||| || || || ||||| | ||| ||||| || ||||| || Sbjct 238 CCTTCGTGGCGGATGGCGACGACGGAAGGCTCGTCCAGCACGATGCCCTTGTCGCGGGCG 297 Query 345 TAAATAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAA 394 | || |||||||| || ||||| |||||||||| ||| ||| |||| || Sbjct 298 AAGATCAGGGTGTTAGCTGTGCCAAGGTCAATGGCAAGGTCGGTGGAGAA 347 >seq30954 Length=334 Score = 127 bits (140), Expect = 6e-27 Identities = 102/123 (83%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 300 GCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTG 359 ||||| ||||| ||||| ||||| ||||| || || |||||||||| || ||||| ||| Sbjct 304 GCCACGACCGAGGGCTCGTTCAGCACGATGCCCTGCCCGCGCACGTAGATCAGGGTATTG 245 Query 360 GCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATG 419 || ||||||||||| ||||| || ||| |||| |||||||| || || ||||||||||| Sbjct 244 GCCGTGCCCAGGTCGATGGACAGGTCGTTGGAGAACATGCCGCGGAGCTTCTTGAACATC 185 Query 420 GGG 422 ||| Sbjct 184 GGG 182 >seq9859 Length=1459 Score = 123 bits (136), Expect = 7e-26 Identities = 241/353 (68%), Gaps = 21/353 (6%) Strand=Plus/Plus Query 57 CGCTCCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGG 116 ||||| ||||||||||| ||| || |||||||| | | || ||||||||| || Sbjct 1 CGCTCGACCTGGGTGGAGCCGCAGGGCACGCAGATGATGATGCGCGGGCTGGGCGTGAGC 60 Query 117 AAACTGTTTTCG--TGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGA 174 | | | || || ||| | |||||||| | || | ||||| |||| || | || Sbjct 61 A--CCGAGCGCGGATGCACCATCTTGATGAACTGCTTGATCATCTGCTCGGTGATGACGA 118 Query 175 AGTCGGCGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGC 234 ||||||| ||||||||||| |||||||| || ||||| | || ||||| || || Sbjct 119 AGTCGGCAATCACGCCGTCCTTCATCGGGCGGATGGCCTCGATGTTGCCGGGCACCTTGC 178 Query 235 CGAGCATGCGCTTGGCCTCGGTGCCGACGGCAACGA-CACTTTTCTGATTACCATG-GGT 292 | |||||| |||||| || ||| || || || ||| || || ||||| || Sbjct 179 CCAGCATGGCCTTGGCTTCACGGCCCACCGCCTGGATCAC----CTTCTTGCCATGCGGG 234 Query 293 C-----------CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGC 341 | || ||||| ||||| || || || | ||| || || || ||||| Sbjct 235 CCGCCTTCGTGGCGGATGGCGACAACGGAGGGTTCGTCCAGAACAATGCCCTTGTCGCGG 294 Query 342 ACGTAAATAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAA 394 || |||| ||||||||||| ||||| || ||||||| ||| ||| |||| || Sbjct 295 GCGAAAATCAGGGTGTTGGCTGTGCCAAGATCAATGGCAAGGTCGGTGGAGAA 347 >seq563 Length=14388 Score = 123 bits (136), Expect = 7e-26 Identities = 266/394 (68%), Gaps = 8/394 (2%) Strand=Plus/Plus Query 12 ACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCCACCTGGGTG 71 || ||||| ||||| || || | | |||||| || || |||||||| ||| || Sbjct 4194 ACATCACGTGCACCAGCATTAAATACTGCTTCACGAATCGCTCGACGCTCGACCAAAGTT 4253 Query 72 GACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGA 131 || || || || || || | | ||||||||| || | | |||| ||||||||| Sbjct 4254 GATTTACATGGTACACATACAACCACACGAGGTGCAGGTGGGAACAAACGTTTTTCGTGA 4313 Query 132 ACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTG--AAGTCGGCGATCACGC 189 || || || || | | | ||| | || || | || || || || || || | Sbjct 4314 ACTTTACCAATAAACTGATTTAACATGGTTTC--AGTCACTTCAAAATCCGCAATTACAC 4371 Query 190 CGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGG 249 |||||||||| |||||||| |||| |||||| | ||||||||||| | ||| | || | Sbjct 4372 CGTCTTTCATAGGACGAATTGCAGAAATATTCGCAGGTGTACGGCCTAACATTTGTTTCG 4431 Query 250 CCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAACCG 309 | || || || ||| | ||| |||| || |||| | ||||| |||||||| | Sbjct 4432 CGTCCAGCCCTACTGCAGCAACAATTTTTTGTGAACCACTGTGACGAATTGCCACAACTG 4491 Query 310 ATGGCTCATTCAGGACGATACCGCG--CTCGCGCACGTAAATAAGGGTGTTGGCAGTGCC 367 ||| ||||| | | || ||||| || | ||| |||||||| || || || || || Sbjct 4492 TTGGTTCATTTAATATAATGCCGCGGCCTGGTGCA--TAAATAAGTGTATTTGCTGTACC 4549 Query 368 CAGGTCAATGGAAAGATCGCTGGAAAACATGCCA 401 | ||||||| ||||| ||||||| |||| Sbjct 4550 TAAATCAATGGCTAGATCCGGCGAAAACAAGCCA 4583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1353118944096