Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq31803 127 2e-27 seq3326 93.3 4e-17 seq17302 78.8 8e-13 >seq31803 Length=312 Score = 127 bits (140), Expect = 2e-27 Identities = 120/152 (79%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| || ||| |||| || ||| | |||||||| Sbjct 249 CGAGTTGCAGCCTACAATCCGAACTGAGAGCTTGTTTTTGGGTTTGGCTTCACCTCGCGG 190 Query 62 GTTGGCGGCCCTCTGT-ATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || || |||||| | | |||||||| ||||||| ||||| | |||||||| || Sbjct 189 CTTCGCTACCCTCTATTAAAGCCCATTGTAGTACGTGTGTAGCCCAAGACATAAGGGGCA 130 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| |||||||||||||||||||||||||||| Sbjct 129 TGATGACTTGACGTCATCCCCACCTTCCTCCG 98 >seq3326 Length=3886 Score = 93.3 bits (102), Expect = 4e-17 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| || ||||||| ||||||| ||||| || |||||||||||||| |||||||||| Sbjct 3142 TGTAATTATCATTGTAGCACGTGTGTAGCCCAACTCATAAGGGCCATGAAGACTTGACGT 3083 Query 135 CATCCCCACCTTCC 148 |||||||||||||| Sbjct 3082 CATCCCCACCTTCC 3069 >seq17302 Length=804 Score = 78.8 bits (86), Expect = 8e-13 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 114 AGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 804 AGGGCCATGAGGACTTGACGTCATCCCCGCCTTCCTCCGGCTTGTCAC 757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415856777830