Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq17302 260 2e-67 seq19869 167 4e-39 seq14004 165 1e-38 seq33584 152 9e-35 seq33948 143 4e-32 seq23303 143 4e-32 seq25714 131 3e-28 seq29677 100 5e-19 >seq17302 Length=804 Score = 260 bits (288), Expect = 2e-67 Identities = 227/282 (80%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| Sbjct 369 CCCACGCTTTCGCGCCTCAGCGTCAGTTACCGTCCAGTAGGCCGCCTTCGCCACTGGTGT 310 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||| ||||||||| |||||||| |||||| |||||||| | ||||||| | || Sbjct 309 TCTTCCCAATATCTACGAATTTCACCTCTACACTGGGAATTCCACCTACCTCTCCGGTAC 250 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||| |||| |||| |||| ||||| | |||||| |||||| Sbjct 249 TCTAGCCTACCAGTCTCAAGCGCAGTTCCCAGGTTAAGCCCGGGGCTTTCACGCCTGACT 190 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || |||||||| |||||||||| |||| ||| |||| | |||||| ||| ||| || Sbjct 189 TGATAAGCCGCCTACGCGCCCTTTACGCCCAGTAATTCCGAACAACGCTAGCCCCCTTCG 130 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 129 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 88 >seq19869 Length=681 Score = 167 bits (184), Expect = 4e-39 Identities = 206/282 (73%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||| | |||||| |||||||||||||||| || | | | |||||||| | ||||| Sbjct 297 CCCGCACTTTCGTGCCTCAGCGTCAGTTATAGTTTCGTTAGCTGCCTTCGCAATCGGTGT 356 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||||||| | |||||||| ||||| |||||| | || | || Sbjct 357 TCTATGACATATCTAAGTATTTCACCACTACATGTCATATTCCGCCAACGTCATCTATAC 416 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || ||| |||| |||| |||| | | ||| ||| | || |||||| |||||| Sbjct 417 TCTAGACCTGCAGTATCAATGGCAGTTTCTCAGTTAAGCTGAGAGATTTCACCACTGACT 476 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| | ||||||| ||||||| |||||||||||||||||| ||| || Sbjct 477 TACAAGTCCGCCTACGCACCCTTTAAACCCAATGAATCCGGATAACGCTTGCATCCTTCG 536 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 | |||||||||||||||||||| ||||||||| |||||||| Sbjct 537 TCTTACCGCGGCTGCTGGCACGAAGTTAGCCGATGCTTATTC 578 >seq14004 Length=1018 Score = 165 bits (182), Expect = 1e-38 Identities = 216/291 (74%), Gaps = 11/291 (4%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCA--GCAATCCGCCTTCGCCACTGGT 58 |||||||||||| |||||||||||| | | | ||| | || | |||||||| | ||| Sbjct 719 CCCACGCTTTCGTGCCTCAGCGTCAATAA--GACCATAGTAAGCTGCCTTCGCAATCGGT 662 Query 59 GTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGC 118 |||| ||||||| ||||||||||||||| |||||| | | ||| || Sbjct 661 GTTCTGAGACATATCTATGCATTTCACCGCTACTTGTCTCATTCCGCCTTCTTCTAGTGC 602 Query 119 ACTCAAGAAAAACAGTTTCAAATGCAG-GCTATGGGTTGAGC--CCATAGTTTTCACATC 175 | ||||| |||| |||| ||| || || | |||||| || | |||||| | Sbjct 601 ATTCAAGTTCTTCAGTATCAAGGGCACTGCGATAG-TTGAGCTGCCGTC--TTTCACTCC 545 Query 176 TGACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 |||||| | |||||||| | ||||||| ||||||||||||||||||||||||| Sbjct 544 TGACTTAACAGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGGAT 485 Query 235 CCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||||||| ||||||||| ||||||| || Sbjct 484 CCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATCCTTATTCTTC 434 >seq33584 Length=265 Score = 152 bits (168), Expect = 9e-35 Identities = 180/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||| |||||| |||||| |||||||||||||| ||| Sbjct 22 CCCACGCTTTCGCACCTCAGTGTCAGTATGAGTCCAGGGTGTCGCCTTCGCCACTGATGT 81 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||| |||||||| ||||| | || Sbjct 82 TCCTCCAGATATCTACGCATTTCACCGCTACACCTGGAATTCCACACCCCTCTACCCTAC 141 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || ||||| || ||||| |||||||||| | ||||||| || || Sbjct 142 TCTAGCTTGCCAGTTCTAACTGCAGTGCCCAGGTTGAGCCCGGGGATTTCACAGCTAGCT 201 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | || ||||| || |||||| |||| ||| |||| |||||||||| ||| || Sbjct 202 TAACAAACCACCTACGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG 261 Query 241 TATT 244 |||| Sbjct 262 TATT 265 >seq33948 Length=254 Score = 143 bits (158), Expect = 4e-32 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||| |||||| | |||| | ||||||||||||| | ||| Sbjct 19 CCCACGCTTTCGTGCCTCAGTGTCAGTGTTGGCCCAGGATGCCGCCTTCGCCACGGATGT 78 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | || |||||||||||||| ||||||| | ||||||| | ||||| | ||| Sbjct 79 TCCTTCTGATCTCTACGCATTTCACTGCTACACCAGAAATTCCGCATCCCTCTACCACAC 138 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||| || | |||| ||||||||||| | ||||||| | |||| Sbjct 139 TCTAGTGATCCAGTATCCACTGCAATTCCCAGGTTGAGCCCAGGGCTTTCACAGCAGACT 198 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGC 232 | || ||||| | | |||||| |||| ||| |||| |||||||||| Sbjct 199 TAAACCACCACCTACGCACGCTTTACGCCCAGTAATTCCGAGTAACGCTTGC 250 >seq23303 Length=550 Score = 143 bits (158), Expect = 4e-32 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||| | || || || | |||||||| | ||||| Sbjct 309 CCCACGCTTTCGAGCCTCAGCGTCAATATTTGCGTAGTAAGCTGCCTTCGCAATAGGTGT 368 Query 61 TCCTCCGT-ATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 | || || ||||||| |||||||||||||||| |||||| || |||| || || Sbjct 369 T-CTATGTCATATCTATGCATTTCACCGCTACATGACATATTCCGCTTACCTCCACAACA 427 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| || ||| |||| |||| ||| ||| | | |||||| ||||| Sbjct 428 TTCAAGACCAATAGTATCAATGGCAGTTCCCAAGTTAAGCTCGGGGATTTCACCACTGAC 487 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | ||||||| | | ||||||| ||||| |||||||||||||||||||| ||| | Sbjct 488 TTATCAGCCCGCCTGCGCTCCCTTTAAACCCAGTAAATCCGGATAACGCTTGCACCCTCC 547 Query 240 GTA 242 ||| Sbjct 548 GTA 550 >seq25714 Length=474 Score = 131 bits (144), Expect = 3e-28 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||||||||||||||| || |||||||| | |||||||| ||| Sbjct 15 GGGTTGAGCCCCGGGATTTCACATCTGACTTACCACGCCGCCTACGCTCCCTTTACGCCC 74 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 | | | |||| | |||||| | |||| |||||||||||||||||||||||| ||||||| Sbjct 75 AGTGATTCCGAACAACGCTCGGGACCTTCGTATTACCGCGGCTGCTGGCACGAAGTTAGC 134 Query 271 CGTGGCTTATTCCTCAGGTA 290 ||| ||| || || |||| Sbjct 135 CGTCCCTTCCTCTTCCGGTA 154 >seq29677 Length=366 Score = 100 bits (110), Expect = 5e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||| | | | || || | |||||||| | |||||| Sbjct 227 CCCACGCTTTCGTGCCTCAGCGTCAATCTCACTTTAGTAAGCTGCCTTCGCAATTGGTGT 168 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||||||| ||||||||||||||| |||||| | | || | | Sbjct 167 TCTGTGACATATCTATGCATTTCACCGCTACTTGTCTCATTCCGCCTACTTCAAGTGTAT 108 Query 121 TCAAGAAAAACAGTTTCAAATGCA-GGCTATGGGTTGAGC--CCATAGTTTTCACATCTG 177 ||||| |||| ||||| ||| || | ||||||| || | |||||| ||| Sbjct 107 TCAAGCTCTTCAGTATCAAAGGCACTGCGA-CAGTTGAGCTGCCGT--CTTTCACTCCTG 51 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACG 227 |||| |||||||| | ||||||| ||||||||||||||||||||| Sbjct 50 ACTTAAAGAGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828514657369